[Mrtrix-discussion] Track Orientation Distribution based Tractography using MRTRIX3

[Robert Smith]

Hi there,

We haven't yet added any instructions for doing this; it's one of a number
of common questions that we will add to the wiki FAQ over time, but right
now we are madly trying to get the software ready for release.
The feature you are looking for is the -tod option within the tckmap
command. That will generate a TOD from your tractogram, which will be
represented in the SH basis and can therefore be input directly to tckgen
(though some scaling will be required, as described in the manuscript).
For future reference, questions regarding MRtrix3 are best posed in the MRtrix3
Google+ discussion forum
<https://plus.google.com/u/0/communities/111072048088633408015>; this
mailing list will be kept open for questions regarding the older MRtrix
version 0.2.

Best regards
Rob


--

*Robert Smith, Ph.D*
Senior Research Officer, Imaging Division

The Florey Institute of Neuroscience and Mental Health
Melbourne Brain Centre - Austin Campus
245 Burgundy Street
Heidelberg Vic 3084
Ph: +61 3 9035 7128
Fax: +61 3 9035 7301
www.florey.edu.au

On Fri, Dec 11, 2015 at 11:16 AM, Ping-Hong Yeh <pinghongyeh at gmail.com>
wrote:

> Hi,
>
> Any instruction on how to do Track Orientation Distribution based
> Tractography as shown in Dhollander 2013 paper using MRTRIX3?
>
> Thank you.
>
> Ping
>
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