[Mrtrix-discussion] template/fd/IN.mif file in Fibre density and cross-section pipeline

[Robert Smith]

Hi Ping-Hong,

This mailing list is reserved for the deprecated MRtrix 0.2 software.
Since this question relates to the *MRtrix3* software package, please
direct your query to the community forum <https://community.mrtrix.org/>.

Thanks
Rob

--

*Robert Smith, Ph.D*
Senior Research Officer, Imaging Division

The Florey Institute of Neuroscience and Mental Health
Melbourne Brain Centre - Austin Campus
245 Burgundy Street
Heidelberg VIC 3084 Australia
Ph: +61 3 9035 7128
Fax: +61 3 9035 7301
www.florey.edu.au

*MRtrix3*: Advanced tools for the analysis of diffusion MRI data
Website <http://www.mrtrix.org/> - Blog <http://www.mrtrix.org/blog/> -
Repository <https://github.com/MRtrix3/mrtrix3> - Community forum
<http://community.mrtrix.org/>

Australian National Imaging Facility Fellow
http://anif.org.au


On Fri, Nov 1, 2019 at 2:42 AM Ping-Hong Yeh <pinghongyeh at gmail.com> wrote:

> Hello Mrtrix3 users,
>
> For calculating FDC values mentioned in the
> https://mrtrix.readthedocs.io/en/latest/fixel_based_analysis/mt_fibre_density_cross-section.html
> <https://protect-au.mimecast.com/s/oXFjCjZroMFLK96kIRZdNb?domain=mrtrix.readthedocs.io>,
>
>
> In Step 18,
>
> foreach * : mrcalc ../template/fd/IN.mif ../template/fc/IN.mif -mult
> ../template/fdc/IN.mif
>
> Are the ../template/fd/IN.mif  files the same as those
> ../template/fd/PRE.mif file, which were the output of Step16,
>
> foreach * : fixelcorrespondence IN/fixel_in_template_space/fd.mif
> ../template/fixel_mask ../template/fd PRE.mif
>
>
> I was not able to locate the ../template/fd/IN.mif.
>
> Thanks.
>
> Ping
>
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