Hi Kerstin,<br><br>Although you address this question to Donald, I am responding because were are doing csd using mrtrix in rat and mice brains too; and (I could be wrong...) it looks like your orientations are flipped in the dorsal-ventral direction. (As attachment a coronal and transversal screenshot from one of our rat-brains; with blobs).<br>
<br>We are able to scale the blobs using the mouse-wheel in the orientation plot window ('side bar'). For fiber tracking in these brains we adjusted the default streamtrack settings.<br><br>Cheers,<br><br>Wim Otte<br>
<br><br><div class="gmail_quote">On Thu, Sep 10, 2009 at 9:58 AM, <span dir="ltr"><<a href="mailto:mrtrix-discussion-request@www.nitrc.org">mrtrix-discussion-request@www.nitrc.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
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1. MRtrix for mice (Kerstin Pannek)<br>
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