<div dir="ltr">Hi there,<div><br></div><div>We haven't yet added any instructions for doing this; it's one of a number of common questions that we will add to the wiki FAQ over time, but right now we are madly trying to get the software ready for release.</div><div>The feature you are looking for is the <font face="monospace, monospace">-tod</font> option within the <font face="monospace, monospace">tckmap</font> command. That will generate a TOD from your tractogram, which will be represented in the SH basis and can therefore be input directly to <font face="monospace, monospace">tckgen</font> (though some scaling will be required, as described in the manuscript).</div><div>For future reference, questions regarding MRtrix3 are best posed in the <a href="https://plus.google.com/u/0/communities/111072048088633408015">MRtrix3 Google+ discussion forum</a>; this mailing list will be kept open for questions regarding the older MRtrix version 0.2.</div><div><br></div><div>Best regards</div><div>Rob</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><br>--<br><br><span style="color:rgb(255,102,0)"><b>Robert Smith, Ph.D</b><br>Senior Research Officer, Imaging Division</span><br><br>The Florey Institute of Neuroscience and Mental Health<br>Melbourne Brain Centre - Austin Campus<br>245 Burgundy Street<br>Heidelberg Vic 3084<br>Ph: +61 3 9035 7128<br>Fax: +61 3 9035 7301<br><a href="http://www.florey.edu.au/" target="_blank">www.florey.edu.au</a><br></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Fri, Dec 11, 2015 at 11:16 AM, Ping-Hong Yeh <span dir="ltr"><<a href="mailto:pinghongyeh@gmail.com" target="_blank">pinghongyeh@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div dir="ltr">Hi,
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<div>Any instruction on how to do Track Orientation Distribution based Tractography as shown in Dhollander 2013 paper using MRTRIX3? </div>
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<div>Thank you. </div><span class="HOEnZb"><font color="#888888">
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<div>Ping</div>
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