Institute of Basic Medical Sciences
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
Yes
University of Oslo
NITRC
CutNII - Custom-angle slicer for brain atlas volumes
Microsoft
C#, Other Programming Language
CutNII provides visualization and slicing of 3D isotropic image data (e.g. MRI) and atlases. The software features orthogonal views of the three standard planes (coronal, sagittal, horizontal) and a custom-angle slice cut through the volume. Slicing generates an arbitrarily positioned, oriented and sized rectangular sample from the dataset.
The main use of CutNII is to produce custom-angle atlas slices that match histological sections with non-standard cutting angles. In addition, custom slices allow inspection of anatomical features from non-conventional angles.
Multi-modality atlasing datasets to be provided with CutNII:
- Waxholm Space Atlas of the Sprague Dawley rat brain (T2* MRI, DTI, and delineations)
- Allen Mouse Brain Atlas reference atlas (grayscale Nissl volume reconstruction and delineations)
2016-12-15
4 - Beta
CutNII for Waxholm Space atlas of the Sprague Dawley rat brain
2016-12-15
4 - Beta
CutNII for Allen Mouse Brain Atlas reference atlas v2
CutNII - Custom-angle slicer for brain atlas volumes
Microscopy, MR, Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International, Atlas Application, 4 - Beta, Win32 (MS Windows), End Users, English, Microsoft, C#, Other Programming Language
http://www.nitrc.org/projects/cutnii/