Attribution Non-Commercial
Yes
NITRC
PESTICA & SLOMOCO: physio and motion correction tools
Linux, MacOS
Yes
MATLAB, sh/bash
Wanyong Shin
Physiologic and motion noise are major problems in BOLD imaging. Physiologic EStimation by Temporal ICA or PESTICA is an MRI-based pulse and respiration monitor. SLice-Oriented MOtion COrrection, or SLOMOCO, is a slice-oriented motion correction for 6DOF motion of every slice. These tools are retrospective and work for ASL, multiband and 7T data.
PESTICA detects the pulse and the breathing cycles _from the data itself_, equivalent to a parallel monitored pulse signal and a respiratory chest-bellows signal. One can use parallel monitored or PESTICA-monitored pulse and respiration for correction using the model-based corrections RETROICOR or IRF-RETROICOR.
The other half of PESTICA is an adaptive physiologic noise removal tool (Impulse Response Function or IRF-RETROICOR) that zooms in on noise with only 6 regressors, getting all the noise that 5th order RETROICOR gets (using 20 regressors). These tools will allow you to correct your data for physiologic noise with what you currently have.
2022-5-19
4 - Beta
PESTICA_AFNI_v5.5
2019-12-04
4 - Beta
PESTICA/SLOMOCOv5.2
2016-6-30
4 - Beta
PESTICA4(SLOMOCO)
2015-1-05
4 - Beta
SpinHistory simulation using SLOMOCO
2014-7-16
4 - Beta
SLOMOCO_July2014
2013-2-21
4 - Beta
pestica v2.0 (recommended)
2012-11-30
4 - Beta
script fix for pestica v1.3 for AFNI users
2012-8-08
4 - Beta
pestica v1.3 for AFNI users (recommended)
2012-8-08
4 - Beta
pestica_afni v1.3 overview and tutorial
2012-7-13
4 - Beta
pestica_afni v1.2 overview and tutorial
2011-6-06
4 - Beta
NYU_TRT_classic_all_sessions
2011-5-25
4 - Beta
PaloAlto_FCP_classic
2011-2-16
4 - Beta
pestica v1.2 additions
2010-11-19
4 - Beta
pestica v1.2 for AFNI users (recommended)
2010-6-28
4 - Beta
pestica-AFNI example 1
PESTICA & SLOMOCO: physio and motion correction tools
Physiological Recording, Algorithm or Reusable Library, Independent Component Analysis, Multivariate Analysis, Workflow, 4 - Beta, Diabetes Mellitus, Hypertension, Stroke, Schizophrenia, MR, Console (Text Based), End Users, Attribution Non-Commercial, English, Linux, MacOS, MATLAB, sh/bash, ANALYZE, Alzheimer Disease
http://www.nitrc.org/projects/pestica/
wanyong.shin@gmail.com