Neural Systems Laboratory, Institute of Basic Medical Sciences GNU General Public License v3 Yes University of Oslo NITRC QCAlign - quality control for the QUINT workflow Yes Sharon Christine Yates Documentation: https://qcalign.readthedocs.io QCAlign was developed to support the use of the QUINT workflow for high-throughput studies. The QUINT workflow supports spatial analysis of labelling in series of brain sections from mouse and rat based on registration to a reference atlas. QCAlign provides information about: 1. The quality of the section images used as input to the QUINT workflow: detect regions that are affected by tissue damage, labelling defects, artifacts or errors in image acquisition. 2. The quality of the atlas-registration performed in the QUINT workflow: detect regions that are poorly registered, or where the registration cannot be verified. 3. QCAlign makes it easier for the user to explore the atlas hierarchy and decide on a customized hierarchy level for the investigation. For user support: support@ebrains.eu 2022-8-09 QCAlign v0.8 QCAlign - quality control for the QUINT workflow GNU General Public License v3, Computational Neuroscience, Alzheimer Disease http://www.nitrc.org/projects/qcalign/ s.c.yates@medisin.uio.no