Neural Systems Laboratory, Institute of Basic Medical Sciences
GNU General Public License v3
Yes
University of Oslo
NITRC
QCAlign - quality control for the QUINT workflow
Yes
Sharon Christine Yates
Documentation: https://qcalign.readthedocs.io
QCAlign was developed to support the use of the QUINT workflow for high-throughput studies. The QUINT workflow supports spatial analysis of labelling in series of brain sections from mouse and rat based on registration to a reference atlas.
QCAlign provides information about:
1. The quality of the section images used as input to the QUINT workflow: detect regions that are affected by tissue damage, labelling defects, artifacts or errors in image acquisition.
2. The quality of the atlas-registration performed in the QUINT workflow: detect regions that are poorly registered, or where the registration cannot be verified.
3. QCAlign makes it easier for the user to explore the atlas hierarchy and decide on a customized hierarchy level for the investigation.
For user support: support@ebrains.eu
2022-8-09
QCAlign v0.8
QCAlign - quality control for the QUINT workflow
GNU General Public License v3, Computational Neuroscience, Alzheimer Disease
http://www.nitrc.org/projects/qcalign/
s.c.yates@medisin.uio.no