File List

Here is a list of all documented files with brief descriptions:

config.h [code]
dwi_normalize.cc	Implements functions of dwi_normalize.h
dwi_normalize.h [code]	Contains function for preprocessing of DW Data
fiber.h [code]	Description of a fiber
filter_model.cc	Implements functions defined in filter_model.h
filter_model.h [code]	Contains all of the model reconstructions
ISignalData.h [code]	Contains interface for signal data. Currently implemented by NrrdData.* using teem
linalg.h [code]	Contains commonly used definitions and functions for linear algebra in 3 dimensions
LU_solver.h [code]	Two algorithms for calculating the LU decomposition of a matrix, and solving a linear system
mainpage.h [code]
math_utilities.h [code]	Implements some math functions needed in various parts of the code
NrrdData.cc	Implementation of NrrdData.h
NrrdData.h [code]	Contains an implementation of ISignalData using the teem library
QuadProg++_vnl.cc	Implementation of QuadProg++_vnl.h
QuadProg++_vnl.h [code]	Quadratic Programming library
QuadProg++_vnl.hh [code]	Quadratic Programming library
seed.cc	Implementation of seed.h
seed.h [code]	Contains data structure for storing seed point information
thread.cc	Implementation of thread.h
thread.h [code]	Contains the functions that deal with the distribution of the threads for mutli-threaded execution
timer.cc	Implementation of timer.h
timer.h [code]	Contains class definition for displaying the progress bar in the console
tractography.cc	Implementation of tractography.h
tractography.h [code]	Contains the Class Tractography, which contains the functions that deal with the actual tracing of the fibers for each model
UKFTractography.cxx	Main file of the project
unscented_kalman_filter.cc	Implementation of unscented_kalman_filter.h
unscented_kalman_filter.h [code]	The implementation of the unscented Kalman Filter The C++ implementation of the unscented Kalman Filter (UKF) with the option to run with constraints
utilities.cc	Implementation of utilities.h
utilities.h [code]	Calculation of frequently used (fa,ga,curve_radius) defined in this file
vtk_writer.cc	Implementation of vtk_writer.h
vtk_writer.h [code]	Fiber writing functionality