__------__
          /~          ~\
         |    //^\\//^\|
       /~~\  ||  o| |o|:~\
      | |6   ||___|_|_||:| 
       \__.  /      o  \/'
        |   (       O   )

/~~~~\ \ \ / | |~~\ | ) ~------~
/' | | | / ____ /~~~)
(/' | | | /' | ( | | | | \ / )/
\ \ \ / /' \ \ __ __ _ _____ ____ _____ \ \|\ / | |\___| | \/ | | | / ____| _ \| __ \ \ | \____/ | | | \ / | ___ _ __ | | _____ _ _| | | |_) | |__) | /^~> \ _/ < | |\/| |/ _ \| '_ \| |/ / _ \ | | | | | _ <| ___/ | | \ \ | | | | (_) | | | | < __/ |_| | |____| |_) | | | | \ \ \ |_| |_|\___/|_| |_|_|\_\___|\__, |\_____|____/|_| -^-\ \ | ) _/^___/

MonkeyCBP (A toolbox for connectivity-based parcellation of monkey brain)

• Multi-ROI oriented brain parcellation
• Automatic parallel computing
• Modular and flexible structure
• Simple and easy-to-use settings

• Usage: bash MonkeyCBP.sh batch_list.txt

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• Tools:
  • FSL (with FDT toolbox), SGE and MATLAB (with SPM8)
• Data files:
  • T1 image for each subject
  • b0 image for each subject
  • images preprocessed by FSL(BedpostX) for each subject
• Directory structure:

     Working_dir
     |-- sub1
     |   |-- T1_sub1.nii
     |   |-- b0_sub1.nii
     |-- ...
     |-- subN
     |   |-- T1_subN.nii
     |   |-- b0_subN.nii
     |-- ROI
     |   |-- ROI_L.nii
     |   `-- ROI_R.nii
     `-- log 

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