open-discussion > RE: phase encoding direction
May 2, 2024  07:05 PM | Martin Styner
RE: phase encoding direction

The diffusion data was not acquired with a dual polarity encoding, but twice refocused acquisition, and thus there is only a single DWI acquired without polarity encoding. I.e., it does not have phase encoding directions that you can enter in mrtrix's preprocessing. You probably could try to enter any polarity encoding information. But the issue is that it will aim to correct distortions in that encoding direction, which might yield less than optimal results.

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TitleAuthorDate
tu ruilin May 2, 2024
RE: phase encoding direction
Martin Styner May 2, 2024
tu ruilin May 6, 2024
Martin Styner May 7, 2024
tu ruilin May 8, 2024
Martin Styner May 13, 2024