Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
858537
2
Nilearn
486001
3
ITK-SNAP
408953
4
FCP/INDI PRIVATE SITE
277171
5
1000 Functional Connectomes Project
171168
6
IIT Human Brain Atlas (v.5.0)
149431
7
MRIcroGL
147092
8
CONN : functional connectivity toolbox
145992
9
DTI-TK
88014
10
BrainNet Viewer
83330
11
IBSR
70671
12
Multi-Modal MRI Reproducibility Resource
59252
13
WFU_PickAtlas
58880
14
BioImage Suite
52533
15
age-ility
48443
16
BXH/XCEDE Tools
44097
17
PANDA: a pipeline tool for diffusion MRI
40883
18
EEGLAB
39654
19
Solar Eclipse Imaging Genetics tools
39269
20
The Neuro Bureau
38238
21
JIST: Java Image Science Toolkit
38094
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37626
24
TOADS-CRUISE Brain Segmentation Tools
36055
25
GIFTI
35006
26
fNIRS Data Analysis Environment
32794
27
Functional Imaging BIRN
32525
28
Generalized PPI Toolbox
30520
29
NITRC Computational Environment (NITRC-CE)
28584
30
3T DWI test-retest reliability dataset
28094
31
BrainMap Database
24990
32
BIDScoin
24908
33
NIDB - Neuroinformatics Database
24045
34
Homer2
22931
35
NeuroDebian
21400
36
Network-Based Statistic (NBS)
20902
37
fMRI-CPCA
20694
38
Anima
20652
39
BrainVisa Morphologist extensions
20386
40
NYU CSC TestRetest
19789
41
UNC 0-1-2 Infant Atlases
18228
42
Mango
17372
43
MITK Diffusion
17085
44
XNAT Extras
17084
45
Neuroimaging Made Easy Blog
16088
46
Automatic Registration Toolbox
15366
47
GRETNA
15091
48
Data Format Tools
14488
49
3D Slicer
14470
50
Surf Ice
14262
51
Freesurfer fsaverage
13888
52
Talairach Daemon
13851
53
QuickNII - Serial section aligner to volumetric atlases
13775
54
Spatially Constrained Parcellation
13766
55
Diffusion Toolkit / TrackVis
13692
56
Brain Biomechanics Imaging Resources
13559
57
Brainstorm
13492
58
Vaa3D and Vaa3D-Neuron
13435
59
SRI24 Atlas: Normal Adult Brain Anatomy
12736
60
DCP：Diffusion Connectome Pipeline
12628
61
dcm2nii
12542
62
CBS High-Res Brain Processing Tools
12512
63
libminc - Medical Image NetCDF library
12511
64
Melbourne Subcortex Atlas
12350
65
Group ICA Toolbox (GIFT and EEGIFT)
12315
66
MRtrix
12275
67
BrainMask Volume Processing Tool
11826
68
Computational Morphometry Toolkit (CMTK)
11604
69
FSL
11427
70
3DSlicerLupusLesionModule
11381
71
Artifact Detection Tools (ART)
11375
72
DWI/DTI Quality Control Tool: DTIPrep
11111
73
CANDI Neuroimaging Access Point
11035
74
Subject Order-Independent Group ICA
10929
75
BrainSuite
10892
76
Human Imaging Database (HID)
10826
77
TumorSim
10820
78
2008 MICCAI MS Lesion Segmentation Challenge
10786
79
BrainVISA
10777
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10442
81
Hammer And WML Modules for 3D Slicer
10405
82
NeuroImaging Analysis Kit (NIAK)
10231
83
NODDI Matlab Toolbox
9706
84
SPM for fNIRS toolbox
9675
85
Source Information Flow Toolbox
9643
86
Diffusional Kurtosis Estimator
9518
87
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9323
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9313
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9285
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9156
91
NIfTI
9035
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8899
93
ENIGMA-DTI pipeline
8794
94
Task Independent Fluctuations Discussion
8603
95
SPHARM-PDM Toolbox
8523
96
MARS (Multi-Atlas Robust Segmentation)
8301
97
Robust Brain Extraction (ROBEX)
8187
98
Awake Rat rsfMRI Database
8154
99
iBEAT
7960
100
Center for Functional Neuroimaging Tech
7713