Hi,

I am running cat12 segmentation for T1 images. It looks like it almost runs all the way through but I get a warning message stating there is an error in cat_main_roi and I am not sure where the error is occurring or why. I have attached a log file and pasted the command line I am putting in.


catbatch{1}.spm.tools.cat.estwrite.data = SPM_file_arg;
catbatch{1}.spm.tools.cat.estwrite.nproc = 4;
catbatch{1}.spm.tools.cat.estwrite.opts.tpm = TPM_arg;
catbatch{1}.spm.tools.cat.estwrite.opts.affreg = 'mni';
catbatch{1}.spm.tools.cat.estwrite.opts.biasstr = 0.5;
catbatch{1}.spm.tools.cat.estwrite.opts.accstr = 0.5;
catbatch{1}.spm.tools.cat.estwrite.extopts.APP = 1070;
catbatch{1}.spm.tools.cat.estwrite.extopts.segmentation.WMHC = 3;
catbatch{1}.spm.tools.cat.estwrite.extopts.LASstr = 0.5;
catbatch{1}.spm.tools.cat.estwrite.extopts.gcutstr = 2;
catbatch{1}.spm.tools.cat.estwrite.extopts.registration.dartel.darteltpm = dartelTPM_arg{1:length(dartelTPM_arg)};
catbatch{1}.spm.tools.cat.estwrite.extopts.vox = 1.5;
catbatch{1}.spm.tools.cat.estwrite.extopts.restypes.fixed = [1 0.1];

catbatch{1}.spm.tools.cat.estwrite.output.surface = 1;
catbatch{1}.spm.tools.cat.estwrite.output.surf_measures = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.neuromorphometrics = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.lpba40 = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.cobra = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.hammers = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.thalamus = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.ibsr = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.aal3 = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.mori = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.anatomy3 = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.julichbrain = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.Schaefer2018_100Parcels_17Networks_order = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.Schaefer2018_200Parcels_17Networks_order = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.Schaefer2018_400Parcels_17Networks_order = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.Schaefer2018_600Parcels_17Networks_order = 1;
catbatch{1}.spm.tools.cat.estwrite.output.ROImenu.atlases.ownatlas = {
[fullfile(base,'roi','AICHA.nii'),',1']
[fullfile(base,'roi','aal.nii'),',1']
[fullfile(base,'roi','aalcat.nii'),',1']
[fullfile(base,'roi','bro.nii'),',1']
[fullfile(base,'roi','jhu.nii'),',1']
};
catbatch{1}.spm.tools.cat.estwrite.output.surface = 1;
catbatch{1}.spm.tools.cat.estwrite.output.GM.native = 1;
catbatch{1}.spm.tools.cat.estwrite.output.GM.warped = 1;
catbatch{1}.spm.tools.cat.estwrite.output.GM.mod = 1;
catbatch{1}.spm.tools.cat.estwrite.output.GM.dartel = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WM.native = 1;
catbatch{1}.spm.tools.cat.estwrite.output.WM.warped = 1;
catbatch{1}.spm.tools.cat.estwrite.output.WM.mod = 1;
catbatch{1}.spm.tools.cat.estwrite.output.WM.dartel = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WMH.mod = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WMH.native = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WMH.warped = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WMH.dartel = 0;
catbatch{1}.spm.tools.cat.estwrite.output.WMHC.mod = 1;
catbatch{1}.spm.tools.cat.estwrite.output.labelnative = 1;
catbatch{1}.spm.tools.cat.estwrite.output.bias.warped = 1;
catbatch{1}.spm.tools.cat.estwrite.output.jacobianwarped = 0;
catbatch{1}.spm.tools.cat.estwrite.output.warps = [1 1];
catbatch{1}.spm.tools.cat.estwrite.output.rmat = 0;
spm_jobman('run',catbatch)
clear catbatch

Thank you,
Allen

请问解决了吗 我也遇到这个问题 谢谢回复