Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
927682
2
Nilearn
703039
3
ITK-SNAP
446946
4
BIDScoin
361469
5
FCP/INDI PRIVATE SITE
352555
6
fMRI-CPCA
196859
7
IIT Human Brain Atlas (v.5.0)
195971
8
MRIcroGL
186330
9
1000 Functional Connectomes Project
179580
10
CONN : functional connectivity toolbox
176715
11
BrainNet Viewer
104245
12
DTI-TK
92614
13
IBSR
78657
14
BioImage Suite
74645
15
Multi-Modal MRI Reproducibility Resource
69686
16
age-ility
65927
17
WFU_PickAtlas
64545
18
BXH/XCEDE Tools
63797
19
NIDB - Neuroinformatics Database
57361
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
54526
21
Solar Eclipse Imaging Genetics tools
50571
22
JIST: Java Image Science Toolkit
50326
23
The Neuro Bureau
47558
24
PANDA: a pipeline tool for diffusion MRI
47370
25
GIFTI
44454
26
BrainFlow
40966
27
EEGLAB
39942
28
Functional Imaging BIRN
39696
29
3T DWI test-retest reliability dataset
39479
30
NITRC Computational Environment (NITRC-CE)
39292
31
TOADS-CRUISE Brain Segmentation Tools
38578
32
fNIRS Data Analysis Environment
38313
33
FreeSurfer
37975
34
Generalized PPI Toolbox
34775
35
BrainMap Database
31908
36
Network-Based Statistic (NBS)
27324
37
QuickNII - Serial section aligner to volumetric atlases
27269
38
Homer2
26926
39
Multimodal Visual Consciousness Study Dataset
25683
40
NeuroDebian
25067
41
UNC 0-1-2 Infant Atlases
24954
42
Anima
24954
43
NYU CSC TestRetest
24692
44
BrainVisa Morphologist extensions
24194
45
Brain Biomechanics Imaging Resources
23457
46
XNAT Extras
21665
47
Neuroimaging Made Easy Blog
19017
48
Melbourne Subcortex Atlas
18878
49
Mango
18738
50
MITK Diffusion
17949
51
CBS High-Res Brain Processing Tools
17842
52
Automatic Registration Toolbox
17563
53
Data Format Tools
17545
54
MIITRA atlas
17451
55
Surf Ice
17435
56
Fast Nonlocal Means for MRI denoising
17062
57
GRETNA
16933
58
Vaa3D and Vaa3D-Neuron
16877
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16495
60
SRI24 Atlas: Normal Adult Brain Anatomy
16445
61
3D Slicer
15745
62
Diffusion Toolkit / TrackVis
15638
63
Talairach Daemon
15635
64
Spatially Constrained Parcellation
15443
65
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
15374
66
Group ICA Toolbox (GIFT and EEGIFT)
15357
67
CANDI Neuroimaging Access Point
15276
68
DCP：Diffusion Connectome Pipeline
14897
69
Computational Morphometry Toolkit (CMTK)
14812
70
BrainMask Volume Processing Tool
14769
71
3DSlicerLupusLesionModule
14447
72
Freesurfer fsaverage
14381
73
BrainSuite
14022
74
DWI/DTI Quality Control Tool: DTIPrep
13941
75
Brainstorm
13824
76
Human Imaging Database (HID)
13552
77
MRtrix
13425
78
TumorSim
13396
79
Awake Rat rsfMRI Database
13342
80
Subject Order-Independent Group ICA
13214
81
FSL
13115
82
dcm2nii
13050
83
libminc - Medical Image NetCDF library
12771
84
Hammer And WML Modules for 3D Slicer
12704
85
NeuroImaging Analysis Kit (NIAK)
12674
86
Artifact Detection Tools (ART)
12418
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12050
88
ENIGMA-DTI pipeline
11904
89
BrainVISA
11548
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11227
91
NIfTI
11128
92
2008 MICCAI MS Lesion Segmentation Challenge
11063
93
Task Independent Fluctuations Discussion
11035
94
Diffusional Kurtosis Estimator
10967
95
MARS (Multi-Atlas Robust Segmentation)
10897
96
SPM for fNIRS toolbox
10895
97
Graph Theory GLM (GTG) MATLAB Toolbox
10878
98
SPHARM-PDM Toolbox
10772
99
NODDI Matlab Toolbox
10732
100
SVNTest
10627