hbn > Corrupt MRI data
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Jul 8, 2024  02:07 PM | Marc Joanisse - The University of Western Ontario
Corrupt MRI data

Hello, 


I am attempting to uncompress several MRI files that seem to be corrupt. For example, when using 'gunzip' or 'tar' commands, I get errors such as 


"gzip: sub-NDARMK046ZRK.tar.gz: unexpected end of file"


"gzip: stdin: invalid compressed data--format violated"
"tar: Unexpected EOF in archive"


I believe the commands are correct as most files unzip successfully, only a few do not. Unzipping via GUI also results in an error. Searching for these errors online suggests the files may have been corrupted either while zipping or during the file transfer process. I have attempted to redownload and transfer to my workspace a number of different ways/times. Specifically using Cyberduck and Globus, which both ensure file integrity. 


It is unclear where this issue may have arisen and I wanted to raise awareness. Is it possible to confirm the file integrity on your end before/after zipping and update the download links? 

Jul 9, 2024  05:07 PM | FCP/INDI Admin
RE: Corrupt MRI data

Hi, thank you for sending this information. Could you please send a list of the sub-IDs for which you encountered the same issue to CMIDataUsage@childmind.org? Thank you!