Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946671
2
Nilearn
877690
3
BIDScoin
493444
4
ITK-SNAP
458020
5
FCP/INDI PRIVATE SITE
370874
6
IIT Human Brain Atlas (v.5.0)
209513
7
fMRI-CPCA
204382
8
MRIcroGL
196749
9
CONN : functional connectivity toolbox
187690
10
1000 Functional Connectomes Project
181796
11
BrainNet Viewer
110661
12
DTI-TK
95035
13
IBSR
80377
14
BioImage Suite
77037
15
Multi-Modal MRI Reproducibility Resource
73175
16
BXH/XCEDE Tools
72944
17
age-ility
71411
18
NIDB - Neuroinformatics Database
70609
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66584
20
WFU_PickAtlas
65743
21
JIST: Java Image Science Toolkit
56700
22
Solar Eclipse Imaging Genetics tools
55643
23
BrainFlow
51964
24
The Neuro Bureau
49582
25
PANDA: a pipeline tool for diffusion MRI
49501
26
GIFTI
47446
27
Functional Imaging BIRN
44269
28
NITRC Computational Environment (NITRC-CE)
43875
29
3T DWI test-retest reliability dataset
42960
30
EEGLAB
40021
31
fNIRS Data Analysis Environment
39942
32
TOADS-CRUISE Brain Segmentation Tools
39638
33
FreeSurfer
37984
34
Generalized PPI Toolbox
36299
35
BrainMap Database
33792
36
Multimodal Visual Consciousness Study Dataset
32676
37
QuickNII - Serial section aligner to volumetric atlases
32335
38
Network-Based Statistic (NBS)
31146
39
UNC 0-1-2 Infant Atlases
29230
40
MIITRA atlas
29026
41
Homer2
27860
42
Brain Biomechanics Imaging Resources
26730
43
NeuroDebian
26142
44
Anima
25900
45
NYU CSC TestRetest
25546
46
BrainVisa Morphologist extensions
25203
47
NeuroImaging Analysis Kit (NIAK)
24681
48
TumorSim
23660
49
XNAT Extras
23440
50
DWI/DTI Quality Control Tool: DTIPrep
22889
51
Neuroimaging Made Easy Blog
21042
52
Melbourne Subcortex Atlas
20706
53
Graph Theory GLM (GTG) MATLAB Toolbox
20217
54
4D UNC Neonatal and Infant Cortical Surface Atlases
19978
55
CBS High-Res Brain Processing Tools
19640
56
Mango
19063
57
Data Format Tools
18297
58
Surf Ice
18228
59
MITK Diffusion
18120
60
Automatic Registration Toolbox
18077
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18016
62
Vaa3D and Vaa3D-Neuron
17938
63
SRI24 Atlas: Normal Adult Brain Anatomy
17711
64
Fast Nonlocal Means for MRI denoising
17656
65
GRETNA
17329
66
BrainMask Volume Processing Tool
17287
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16812
68
Group ICA Toolbox (GIFT and EEGIFT)
16517
69
CANDI Neuroimaging Access Point
16488
70
Talairach Daemon
16444
71
SPHARM-PDM Toolbox
16203
72
Diffusion Toolkit / TrackVis
16125
73
3D Slicer
16061
74
Spatially Constrained Parcellation
15918
75
Subject Order-Independent Group ICA
15596
76
DCP：Diffusion Connectome Pipeline
15592
77
Freesurfer fsaverage
15472
78
3DSlicerLupusLesionModule
15386
79
Computational Morphometry Toolkit (CMTK)
15341
80
BrainSuite
15040
81
Awake Rat rsfMRI Database
14798
82
Human Imaging Database (HID)
14614
83
Hammer And WML Modules for 3D Slicer
13923
84
MRtrix
13910
85
Brainstorm
13835
86
FSL
13596
87
SVNTest
13542
88
ENIGMA-DTI pipeline
13490
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13417
90
dcm2nii
13157
91
ShapePopulationViewer
13148
92
MARS (Multi-Atlas Robust Segmentation)
12908
93
libminc - Medical Image NetCDF library
12826
94
Artifact Detection Tools (ART)
12811
95
Nighres
11792
96
BrainVISA
11770
97
NIfTI
11741
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11696
99
Task Independent Fluctuations Discussion
11567
100
SPM for fNIRS toolbox
11414