Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946981
2
Nilearn
879496
3
BIDScoin
499684
4
ITK-SNAP
458361
5
FCP/INDI PRIVATE SITE
371348
6
IIT Human Brain Atlas (v.5.0)
209759
7
fMRI-CPCA
204480
8
MRIcroGL
196989
9
CONN : functional connectivity toolbox
188098
10
1000 Functional Connectomes Project
181860
11
BrainNet Viewer
110825
12
DTI-TK
95073
13
IBSR
80393
14
BioImage Suite
77083
15
BXH/XCEDE Tools
73522
16
Multi-Modal MRI Reproducibility Resource
73242
17
age-ility
71423
18
NIDB - Neuroinformatics Database
71088
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66692
20
WFU_PickAtlas
65768
21
JIST: Java Image Science Toolkit
56811
22
Solar Eclipse Imaging Genetics tools
55728
23
BrainFlow
52357
24
The Neuro Bureau
49612
25
PANDA: a pipeline tool for diffusion MRI
49565
26
GIFTI
47506
27
Functional Imaging BIRN
44315
28
NITRC Computational Environment (NITRC-CE)
44122
29
3T DWI test-retest reliability dataset
43038
30
EEGLAB
40023
31
fNIRS Data Analysis Environment
39975
32
TOADS-CRUISE Brain Segmentation Tools
39667
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36326
35
BrainMap Database
33816
36
Multimodal Visual Consciousness Study Dataset
32928
37
QuickNII - Serial section aligner to volumetric atlases
32443
38
Network-Based Statistic (NBS)
31249
39
MIITRA atlas
29314
40
UNC 0-1-2 Infant Atlases
29273
41
Homer2
27882
42
Brain Biomechanics Imaging Resources
26838
43
NeuroDebian
26174
44
Anima
25936
45
NYU CSC TestRetest
25563
46
BrainVisa Morphologist extensions
25264
47
NeuroImaging Analysis Kit (NIAK)
25224
48
TumorSim
23765
49
XNAT Extras
23476
50
DWI/DTI Quality Control Tool: DTIPrep
23280
51
Neuroimaging Made Easy Blog
21057
52
Melbourne Subcortex Atlas
20781
53
Graph Theory GLM (GTG) MATLAB Toolbox
20737
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20020
55
CBS High-Res Brain Processing Tools
19658
56
Mango
19069
57
Data Format Tools
18313
58
Surf Ice
18240
59
MITK Diffusion
18126
60
Automatic Registration Toolbox
18097
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18063
62
Vaa3D and Vaa3D-Neuron
17960
63
SRI24 Atlas: Normal Adult Brain Anatomy
17738
64
Fast Nonlocal Means for MRI denoising
17664
65
GRETNA
17336
66
BrainMask Volume Processing Tool
17307
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16909
68
Group ICA Toolbox (GIFT and EEGIFT)
16546
69
CANDI Neuroimaging Access Point
16526
70
Talairach Daemon
16450
71
SPHARM-PDM Toolbox
16252
72
Diffusion Toolkit / TrackVis
16137
73
3D Slicer
16069
74
Spatially Constrained Parcellation
15928
75
Subject Order-Independent Group ICA
15652
76
DCP：Diffusion Connectome Pipeline
15618
77
Freesurfer fsaverage
15498
78
3DSlicerLupusLesionModule
15415
79
Computational Morphometry Toolkit (CMTK)
15343
80
BrainSuite
15067
81
Awake Rat rsfMRI Database
14844
82
Human Imaging Database (HID)
14631
83
Hammer And WML Modules for 3D Slicer
13941
84
MRtrix
13915
85
Brainstorm
13835
86
SVNTest
13642
87
FSL
13613
88
ENIGMA-DTI pipeline
13527
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13430
90
ShapePopulationViewer
13203
91
dcm2nii
13159
92
MARS (Multi-Atlas Robust Segmentation)
12935
93
libminc - Medical Image NetCDF library
12827
94
Artifact Detection Tools (ART)
12825
95
Nighres
11921
96
BrainVISA
11774
97
NIfTI
11752
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11696
99
Task Independent Fluctuations Discussion
11577
100
SPM for fNIRS toolbox
11438