Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1100140
2
MRIcron
1015552
3
BIDScoin
916998
4
ITK-SNAP
477456
5
FCP/INDI PRIVATE SITE
397466
6
IIT Human Brain Atlas (v.5.0)
238317
7
CONN : functional connectivity toolbox
223351
8
MRIcroGL
212385
9
fMRI-CPCA
209875
10
1000 Functional Connectomes Project
185488
11
BrainNet Viewer
130479
12
BXH/XCEDE Tools
110247
13
NIDB - Neuroinformatics Database
101308
14
DTI-TK
99284
15
age-ility
90035
16
IBSR
84371
17
BioImage Suite
83908
18
Solar Eclipse Imaging Genetics tools
79570
19
Multi-Modal MRI Reproducibility Resource
78793
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
78694
21
JIST: Java Image Science Toolkit
75261
22
BrainFlow
73795
23
WFU_PickAtlas
67263
24
GIFTI
59974
25
NITRC Computational Environment (NITRC-CE)
57469
26
PANDA: a pipeline tool for diffusion MRI
55774
27
The Neuro Bureau
52719
28
3T DWI test-retest reliability dataset
50645
29
Functional Imaging BIRN
50002
30
Multimodal Visual Consciousness Study Dataset
46678
31
TOADS-CRUISE Brain Segmentation Tools
44564
32
Generalized PPI Toolbox
43602
33
fNIRS Data Analysis Environment
43141
34
QuickNII - Serial section aligner to volumetric atlases
41982
35
EEGLAB
40104
36
Standard Amygdalar fMRI Probe Tasks
38813
37
Network-Based Statistic (NBS)
38725
38
BrainMap Database
38633
39
FreeSurfer
37997
40
MIITRA atlas
37565
41
NeuroImaging Analysis Kit (NIAK)
35774
42
UNC 0-1-2 Infant Atlases
34533
43
Brain Biomechanics Imaging Resources
33920
44
Graph Theory GLM (GTG) MATLAB Toolbox
31865
45
DWI/DTI Quality Control Tool: DTIPrep
31763
46
Homer2
31237
47
TumorSim
30383
48
CBS High-Res Brain Processing Tools
29061
49
Melbourne Subcortex Atlas
28706
50
NeuroDebian
28329
51
NYU CSC TestRetest
28326
52
BrainVisa Morphologist extensions
27799
53
Anima
27626
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26972
55
XNAT Extras
26346
56
4D UNC Neonatal and Infant Cortical Surface Atlases
26037
57
SPHARM-PDM Toolbox
24268
58
Neuroimaging Made Easy Blog
23519
59
SRI24 Atlas: Normal Adult Brain Anatomy
22363
60
BrainMask Volume Processing Tool
21890
61
CANDI Neuroimaging Access Point
21674
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
21614
63
Data Format Tools
20486
64
Fast Nonlocal Means for MRI denoising
20455
65
Vaa3D and Vaa3D-Neuron
20257
66
3DSlicerLupusLesionModule
19998
67
Mango
19674
68
ShapePopulationViewer
19521
69
Surf Ice
19517
70
MRtrix
19191
71
Group ICA Toolbox (GIFT and EEGIFT)
19142
72
Automatic Registration Toolbox
19065
73
ANDA
18701
74
Awake Rat rsfMRI Database
18554
75
MITK Diffusion
18484
76
Hammer And WML Modules for 3D Slicer
17904
77
GRETNA
17881
78
Subject Order-Independent Group ICA
17870
79
Talairach Daemon
17634
80
AutoSeg
17399
81
DCP：Diffusion Connectome Pipeline
17280
82
Human Imaging Database (HID)
17243
83
Diffusion Toolkit / TrackVis
17097
84
Freesurfer fsaverage
17014
85
ENIGMA-DTI pipeline
16875
86
Spatially Constrained Parcellation
16829
87
BrainSuite
16796
88
Computational Morphometry Toolkit (CMTK)
16708
89
Multi-site Frequency Drift MR Spectroscopy
16400
90
3D Slicer
16344
91
NeuroDOT
16207
92
MARS (Multi-Atlas Robust Segmentation)
15514
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15363
94
FSL
14774
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14687
96
Maps4Mipav (Exploratory JIST)
14121
97
Artifact Detection Tools (ART)
14035
98
3DMeshMetric
13973
99
Brainstorm
13849
100
ABSORB for groupwise registration
13841