Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
916429
2
Nilearn
633437
3
ITK-SNAP
436812
4
FCP/INDI PRIVATE SITE
336824
5
BIDScoin
210770
6
IIT Human Brain Atlas (v.5.0)
180680
7
MRIcroGL
178635
8
1000 Functional Connectomes Project
177722
9
CONN : functional connectivity toolbox
168069
10
fMRI-CPCA
104693
11
BrainNet Viewer
99594
12
DTI-TK
91504
13
IBSR
77359
14
BioImage Suite
72669
15
Multi-Modal MRI Reproducibility Resource
67284
16
WFU_PickAtlas
63507
17
age-ility
59265
18
BXH/XCEDE Tools
56011
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
50681
20
Solar Eclipse Imaging Genetics tools
47762
21
JIST: Java Image Science Toolkit
47299
22
NIDB - Neuroinformatics Database
47072
23
PANDA: a pipeline tool for diffusion MRI
45749
24
The Neuro Bureau
45535
25
GIFTI
41655
26
EEGLAB
39886
27
FreeSurfer
37959
28
TOADS-CRUISE Brain Segmentation Tools
37808
29
Functional Imaging BIRN
37789
30
fNIRS Data Analysis Environment
37103
31
3T DWI test-retest reliability dataset
36308
32
NITRC Computational Environment (NITRC-CE)
36142
33
Generalized PPI Toolbox
33539
34
BrainMap Database
30110
35
BrainFlow
29474
36
Homer2
26132
37
Network-Based Statistic (NBS)
25555
38
NeuroDebian
24252
39
Anima
24155
40
NYU CSC TestRetest
24107
41
QuickNII - Serial section aligner to volumetric atlases
24030
42
BrainVisa Morphologist extensions
23172
43
UNC 0-1-2 Infant Atlases
23050
44
Brain Biomechanics Imaging Resources
21409
45
XNAT Extras
20688
46
Multimodal Visual Consciousness Study Dataset
19878
47
Mango
18464
48
Melbourne Subcortex Atlas
18065
49
MITK Diffusion
17842
50
Neuroimaging Made Easy Blog
17355
51
Automatic Registration Toolbox
17184
52
Data Format Tools
16870
53
Surf Ice
16809
54
GRETNA
16635
55
CBS High-Res Brain Processing Tools
16261
56
Vaa3D and Vaa3D-Neuron
15991
57
3D Slicer
15480
58
Diffusion Toolkit / TrackVis
15243
59
Talairach Daemon
15238
60
Spatially Constrained Parcellation
15045
61
SRI24 Atlas: Normal Adult Brain Anatomy
14794
62
Group ICA Toolbox (GIFT and EEGIFT)
14635
63
DCP：Diffusion Connectome Pipeline
14365
64
Freesurfer fsaverage
14211
65
CANDI Neuroimaging Access Point
14180
66
Computational Morphometry Toolkit (CMTK)
14117
67
BrainMask Volume Processing Tool
13980
68
Brainstorm
13818
69
MIITRA atlas
13665
70
3DSlicerLupusLesionModule
13445
71
BrainSuite
13294
72
4D UNC Neonatal and Infant Cortical Surface Atlases
13175
73
dcm2nii
12966
74
MRtrix
12933
75
Human Imaging Database (HID)
12870
76
FSL
12748
77
DWI/DTI Quality Control Tool: DTIPrep
12733
78
libminc - Medical Image NetCDF library
12723
79
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
12723
80
Subject Order-Independent Group ICA
12536
81
TumorSim
12521
82
Artifact Detection Tools (ART)
12128
83
Hammer And WML Modules for 3D Slicer
12061
84
Awake Rat rsfMRI Database
11951
85
NeuroImaging Analysis Kit (NIAK)
11729
86
BrainVISA
11382
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
11207
88
ENIGMA-DTI pipeline
11067
89
2008 MICCAI MS Lesion Segmentation Challenge
11026
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11015
91
NIfTI
10680
92
SPM for fNIRS toolbox
10586
93
NODDI Matlab Toolbox
10567
94
Diffusional Kurtosis Estimator
10559
95
Task Independent Fluctuations Discussion
10370
96
MARS (Multi-Atlas Robust Segmentation)
10231
97
Source Information Flow Toolbox
10050
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9878
99
SPHARM-PDM Toolbox
9749
100
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9650