Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1356975
2
Nilearn
1254045
3
MRIcron
1050161
4
ITK-SNAP
489631
5
FCP/INDI PRIVATE SITE
415548
6
IIT Human Brain Atlas (v.5.0)
269060
7
CONN : functional connectivity toolbox
251684
8
MRIcroGL
220606
9
fMRI-CPCA
215727
10
1000 Functional Connectomes Project
187545
11
BrainNet Viewer
145765
12
BXH/XCEDE Tools
138632
13
NIDB - Neuroinformatics Database
125441
14
age-ility
115906
15
DTI-TK
101904
16
BioImage Suite
99988
17
Solar Eclipse Imaging Genetics tools
94895
18
BrainFlow
92672
19
JIST: Java Image Science Toolkit
92223
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
88882
21
IBSR
86962
22
Multi-Modal MRI Reproducibility Resource
83302
23
GIFTI
68374
24
WFU_PickAtlas
67892
25
NITRC Computational Environment (NITRC-CE)
67820
26
PANDA: a pipeline tool for diffusion MRI
59618
27
Multimodal Visual Consciousness Study Dataset
57295
28
The Neuro Bureau
55563
29
3T DWI test-retest reliability dataset
55543
30
Standard Amygdalar fMRI Probe Tasks
55218
31
Functional Imaging BIRN
54424
32
QuickNII - Serial section aligner to volumetric atlases
50429
33
TOADS-CRUISE Brain Segmentation Tools
49108
34
Generalized PPI Toolbox
48143
35
MIITRA atlas
46070
36
fNIRS Data Analysis Environment
45434
37
BrainMap Database
44256
38
Melbourne Subcortex Atlas
44141
39
Network-Based Statistic (NBS)
41592
40
NeuroImaging Analysis Kit (NIAK)
41281
41
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
41164
42
Brain Biomechanics Imaging Resources
40311
43
EEGLAB
40131
44
DWI/DTI Quality Control Tool: DTIPrep
40047
45
UNC 0-1-2 Infant Atlases
38960
46
Graph Theory GLM (GTG) MATLAB Toolbox
38727
47
FreeSurfer
38008
48
CBS High-Res Brain Processing Tools
37817
49
TumorSim
36080
50
Homer2
33254
51
4D UNC Neonatal and Infant Cortical Surface Atlases
32302
52
NYU CSC TestRetest
31323
53
NeuroDebian
29738
54
BrainVisa Morphologist extensions
29637
55
SPHARM-PDM Toolbox
29521
56
Anima
29356
57
XNAT Extras
28533
58
ANDA
27792
59
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
25948
60
BrainMask Volume Processing Tool
25897
61
SRI24 Atlas: Normal Adult Brain Anatomy
25883
62
CANDI Neuroimaging Access Point
25867
63
Neuroimaging Made Easy Blog
25671
64
Multi-site Frequency Drift MR Spectroscopy
25525
65
ShapePopulationViewer
25007
66
3DSlicerLupusLesionModule
24275
67
AutoSeg
23810
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
23251
69
MRtrix
22846
70
Fast Nonlocal Means for MRI denoising
22108
71
Data Format Tools
22042
72
Vaa3D and Vaa3D-Neuron
21934
73
Awake Rat rsfMRI Database
21803
74
NeuroDOT
21697
75
Group ICA Toolbox (GIFT and EEGIFT)
20764
76
Hammer And WML Modules for 3D Slicer
20683
77
Surf Ice
20212
78
Mango
20058
79
Automatic Registration Toolbox
19779
80
Human Imaging Database (HID)
19333
81
Talairach Daemon
18937
82
Subject Order-Independent Group ICA
18891
83
MITK Diffusion
18787
84
ENIGMA-DTI pipeline
18754
85
3D Slicer
18618
86
ReproNim: A Center for Reproducible Neuroimaging Computation
18407
87
Freesurfer fsaverage
18350
88
Computational Morphometry Toolkit (CMTK)
18328
89
3DMeshMetric
18291
90
GRETNA
18168
91
DCP：Diffusion Connectome Pipeline
18109
92
BrainSuite
18075
93
Diffusion Toolkit / TrackVis
17738
94
MARS (Multi-Atlas Robust Segmentation)
17634
95
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
17603
96
Spatially Constrained Parcellation
17426
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17083
98
Maps4Mipav (Exploratory JIST)
16712
99
Neurosynth Compose
16638
100
JIP fMRI Analysis Toolkit
16277