Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
914495
2
Nilearn
622582
3
ITK-SNAP
434909
4
FCP/INDI PRIVATE SITE
333377
5
BIDScoin
193339
6
MRIcroGL
177485
7
1000 Functional Connectomes Project
177353
8
IIT Human Brain Atlas (v.5.0)
175559
9
CONN : functional connectivity toolbox
166546
10
fMRI-CPCA
98881
11
BrainNet Viewer
98697
12
DTI-TK
91361
13
IBSR
77121
14
BioImage Suite
72193
15
Multi-Modal MRI Reproducibility Resource
66693
16
WFU_PickAtlas
63293
17
age-ility
58241
18
BXH/XCEDE Tools
52553
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
49563
20
Solar Eclipse Imaging Genetics tools
46969
21
JIST: Java Image Science Toolkit
45916
22
PANDA: a pipeline tool for diffusion MRI
45496
23
The Neuro Bureau
45166
24
NIDB - Neuroinformatics Database
44683
25
GIFTI
41050
26
EEGLAB
39872
27
FreeSurfer
37951
28
TOADS-CRUISE Brain Segmentation Tools
37516
29
Functional Imaging BIRN
37392
30
fNIRS Data Analysis Environment
36843
31
3T DWI test-retest reliability dataset
35536
32
NITRC Computational Environment (NITRC-CE)
34948
33
Generalized PPI Toolbox
33319
34
BrainMap Database
29570
35
BrainFlow
26217
36
Homer2
26019
37
Network-Based Statistic (NBS)
25358
38
NeuroDebian
24043
39
Anima
23998
40
NYU CSC TestRetest
23574
41
QuickNII - Serial section aligner to volumetric atlases
23550
42
BrainVisa Morphologist extensions
22902
43
UNC 0-1-2 Infant Atlases
22705
44
Brain Biomechanics Imaging Resources
21002
45
XNAT Extras
20370
46
Mango
18406
47
Multimodal Visual Consciousness Study Dataset
18123
48
Melbourne Subcortex Atlas
17915
49
MITK Diffusion
17825
50
Neuroimaging Made Easy Blog
17211
51
Automatic Registration Toolbox
17069
52
Surf Ice
16728
53
Data Format Tools
16597
54
GRETNA
16596
55
CBS High-Res Brain Processing Tools
15870
56
Vaa3D and Vaa3D-Neuron
15760
57
3D Slicer
15427
58
Diffusion Toolkit / TrackVis
15148
59
Talairach Daemon
15117
60
Spatially Constrained Parcellation
14973
61
SRI24 Atlas: Normal Adult Brain Anatomy
14688
62
Group ICA Toolbox (GIFT and EEGIFT)
14535
63
DCP：Diffusion Connectome Pipeline
14315
64
Freesurfer fsaverage
14168
65
Computational Morphometry Toolkit (CMTK)
13985
66
CANDI Neuroimaging Access Point
13945
67
Brainstorm
13808
68
BrainMask Volume Processing Tool
13801
69
3DSlicerLupusLesionModule
13124
70
BrainSuite
13076
71
4D UNC Neonatal and Infant Cortical Surface Atlases
12961
72
dcm2nii
12952
73
MRtrix
12897
74
libminc - Medical Image NetCDF library
12719
75
Human Imaging Database (HID)
12689
76
FSL
12637
77
MIITRA atlas
12566
78
DWI/DTI Quality Control Tool: DTIPrep
12546
79
Subject Order-Independent Group ICA
12458
80
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
12380
81
TumorSim
12276
82
Artifact Detection Tools (ART)
12089
83
Hammer And WML Modules for 3D Slicer
11927
84
NeuroImaging Analysis Kit (NIAK)
11543
85
Awake Rat rsfMRI Database
11496
86
BrainVISA
11340
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
11044
88
2008 MICCAI MS Lesion Segmentation Challenge
11022
89
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10981
90
ENIGMA-DTI pipeline
10924
91
NIfTI
10565
92
SPM for fNIRS toolbox
10550
93
NODDI Matlab Toolbox
10543
94
Diffusional Kurtosis Estimator
10442
95
Task Independent Fluctuations Discussion
10150
96
MARS (Multi-Atlas Robust Segmentation)
10078
97
Source Information Flow Toolbox
10018
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9863
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9618
100
SPHARM-PDM Toolbox
9612