Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
971434
2
Nilearn
953889
3
BIDScoin
660755
4
ITK-SNAP
465243
5
FCP/INDI PRIVATE SITE
381104
6
IIT Human Brain Atlas (v.5.0)
221236
7
fMRI-CPCA
206410
8
MRIcroGL
203491
9
CONN : functional connectivity toolbox
200201
10
1000 Functional Connectomes Project
183424
11
BrainNet Viewer
117827
12
DTI-TK
96554
13
BXH/XCEDE Tools
86139
14
NIDB - Neuroinformatics Database
82476
15
IBSR
81674
16
BioImage Suite
79666
17
age-ility
78984
18
Multi-Modal MRI Reproducibility Resource
75650
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
71106
20
Solar Eclipse Imaging Genetics tools
66491
21
WFU_PickAtlas
66467
22
JIST: Java Image Science Toolkit
64217
23
BrainFlow
60372
24
GIFTI
52878
25
PANDA: a pipeline tool for diffusion MRI
52452
26
The Neuro Bureau
50654
27
NITRC Computational Environment (NITRC-CE)
50160
28
Functional Imaging BIRN
46369
29
3T DWI test-retest reliability dataset
46368
30
TOADS-CRUISE Brain Segmentation Tools
41652
31
fNIRS Data Analysis Environment
41335
32
EEGLAB
40061
33
Multimodal Visual Consciousness Study Dataset
38597
34
Generalized PPI Toolbox
38476
35
FreeSurfer
37987
36
BrainMap Database
35911
37
QuickNII - Serial section aligner to volumetric atlases
35871
38
Network-Based Statistic (NBS)
33980
39
MIITRA atlas
32468
40
NeuroImaging Analysis Kit (NIAK)
31899
41
UNC 0-1-2 Infant Atlases
31022
42
Brain Biomechanics Imaging Resources
29471
43
Homer2
29147
44
NeuroDebian
26981
45
Anima
26647
46
DWI/DTI Quality Control Tool: DTIPrep
26585
47
NYU CSC TestRetest
26304
48
BrainVisa Morphologist extensions
26267
49
TumorSim
26236
50
XNAT Extras
24473
51
Graph Theory GLM (GTG) MATLAB Toolbox
24327
52
CBS High-Res Brain Processing Tools
22730
53
Melbourne Subcortex Atlas
22548
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
22315
55
Neuroimaging Made Easy Blog
22085
56
4D UNC Neonatal and Infant Cortical Surface Atlases
22057
57
SPHARM-PDM Toolbox
21474
58
SRI24 Atlas: Normal Adult Brain Anatomy
19568
59
Mango
19295
60
Data Format Tools
19050
61
Vaa3D and Vaa3D-Neuron
18819
62
Fast Nonlocal Means for MRI denoising
18803
63
BrainMask Volume Processing Tool
18770
64
Surf Ice
18633
65
Automatic Registration Toolbox
18463
66
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18440
67
MITK Diffusion
18305
68
CANDI Neuroimaging Access Point
18221
69
GRETNA
17514
70
Group ICA Toolbox (GIFT and EEGIFT)
17496
71
Talairach Daemon
16898
72
3DSlicerLupusLesionModule
16846
73
Diffusion Toolkit / TrackVis
16497
74
Subject Order-Independent Group ICA
16485
75
Awake Rat rsfMRI Database
16348
76
Spatially Constrained Parcellation
16237
77
DCP：Diffusion Connectome Pipeline
16212
78
3D Slicer
16205
79
Freesurfer fsaverage
15991
80
Computational Morphometry Toolkit (CMTK)
15935
81
BrainSuite
15737
82
MRtrix
15605
83
Human Imaging Database (HID)
15496
84
ShapePopulationViewer
15412
85
Hammer And WML Modules for 3D Slicer
15272
86
ENIGMA-DTI pipeline
14838
87
AutoSeg
14327
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14249
89
MARS (Multi-Atlas Robust Segmentation)
14155
90
FSL
14048
91
Brainstorm
13841
92
Artifact Detection Tools (ART)
13376
93
dcm2nii
13219
94
libminc - Medical Image NetCDF library
12871
95
Nighres
12595
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12373
97
ABSORB for groupwise registration
12308
98
Maps4Mipav (Exploratory JIST)
12201
99
NIfTI
12189
100
ANDA
12141