Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1030292
2
MRIcron
991585
3
BIDScoin
795168
4
ITK-SNAP
471893
5
FCP/INDI PRIVATE SITE
389556
6
IIT Human Brain Atlas (v.5.0)
229790
7
CONN : functional connectivity toolbox
212064
8
MRIcroGL
208360
9
fMRI-CPCA
208089
10
1000 Functional Connectomes Project
184589
11
BrainNet Viewer
124218
12
DTI-TK
97795
13
BXH/XCEDE Tools
97716
14
NIDB - Neuroinformatics Database
92472
15
age-ility
83122
16
IBSR
82873
17
BioImage Suite
81921
18
Multi-Modal MRI Reproducibility Resource
77311
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
74913
20
Solar Eclipse Imaging Genetics tools
72714
21
JIST: Java Image Science Toolkit
69196
22
WFU_PickAtlas
66911
23
BrainFlow
66782
24
GIFTI
56145
25
PANDA: a pipeline tool for diffusion MRI
54018
26
NITRC Computational Environment (NITRC-CE)
53046
27
The Neuro Bureau
51865
28
3T DWI test-retest reliability dataset
48340
29
Functional Imaging BIRN
48227
30
TOADS-CRUISE Brain Segmentation Tools
42830
31
Multimodal Visual Consciousness Study Dataset
42474
32
fNIRS Data Analysis Environment
42295
33
Generalized PPI Toolbox
40908
34
EEGLAB
40086
35
QuickNII - Serial section aligner to volumetric atlases
38603
36
FreeSurfer
37989
37
BrainMap Database
37282
38
Network-Based Statistic (NBS)
36332
39
MIITRA atlas
35163
40
NeuroImaging Analysis Kit (NIAK)
33661
41
UNC 0-1-2 Infant Atlases
32829
42
Brain Biomechanics Imaging Resources
31696
43
Homer2
30076
44
DWI/DTI Quality Control Tool: DTIPrep
28919
45
TumorSim
28326
46
Graph Theory GLM (GTG) MATLAB Toolbox
28121
47
NeuroDebian
27682
48
NYU CSC TestRetest
27534
49
Anima
27128
50
BrainVisa Morphologist extensions
27063
51
Melbourne Subcortex Atlas
25509
52
CBS High-Res Brain Processing Tools
25359
53
XNAT Extras
25351
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
24574
55
4D UNC Neonatal and Infant Cortical Surface Atlases
23874
56
Neuroimaging Made Easy Blog
22833
57
SPHARM-PDM Toolbox
22466
58
Standard Amygdalar fMRI Probe Tasks
22097
59
SRI24 Atlas: Normal Adult Brain Anatomy
21064
60
BrainMask Volume Processing Tool
20341
61
Data Format Tools
19749
62
CANDI Neuroimaging Access Point
19627
63
Vaa3D and Vaa3D-Neuron
19615
64
Fast Nonlocal Means for MRI denoising
19605
65
Mango
19492
66
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19384
67
Surf Ice
19110
68
Automatic Registration Toolbox
18759
69
Group ICA Toolbox (GIFT and EEGIFT)
18499
70
MITK Diffusion
18431
71
3DSlicerLupusLesionModule
18218
72
GRETNA
17683
73
Awake Rat rsfMRI Database
17398
74
Talairach Daemon
17243
75
Subject Order-Independent Group ICA
17229
76
ShapePopulationViewer
17097
77
MRtrix
17046
78
DCP：Diffusion Connectome Pipeline
16819
79
Diffusion Toolkit / TrackVis
16799
80
Freesurfer fsaverage
16590
81
Hammer And WML Modules for 3D Slicer
16588
82
Spatially Constrained Parcellation
16542
83
Computational Morphometry Toolkit (CMTK)
16403
84
Human Imaging Database (HID)
16308
85
3D Slicer
16287
86
BrainSuite
16286
87
ENIGMA-DTI pipeline
15945
88
AutoSeg
15718
89
ANDA
15246
90
MARS (Multi-Atlas Robust Segmentation)
14823
91
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14812
92
FSL
14417
93
Brainstorm
13846
94
NeuroDOT
13810
95
Artifact Detection Tools (ART)
13675
96
dcm2nii
13269
97
Maps4Mipav (Exploratory JIST)
13164
98
Multi-site Frequency Drift MR Spectroscopy
13161
99
Nighres
13068
100
ABSORB for groupwise registration
13000