Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
857641
2
Nilearn
484966
3
ITK-SNAP
408469
4
FCP/INDI PRIVATE SITE
276544
5
1000 Functional Connectomes Project
171094
6
IIT Human Brain Atlas (v.5.0)
149200
7
MRIcroGL
146669
8
CONN : functional connectivity toolbox
145733
9
DTI-TK
87966
10
BrainNet Viewer
83160
11
IBSR
70590
12
Multi-Modal MRI Reproducibility Resource
59123
13
WFU_PickAtlas
58788
14
BioImage Suite
52140
15
age-ility
48217
16
BXH/XCEDE Tools
44063
17
PANDA: a pipeline tool for diffusion MRI
40832
18
EEGLAB
39649
19
Solar Eclipse Imaging Genetics tools
39133
20
The Neuro Bureau
38201
21
JIST: Java Image Science Toolkit
38016
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37481
24
TOADS-CRUISE Brain Segmentation Tools
36041
25
GIFTI
34940
26
fNIRS Data Analysis Environment
32729
27
Functional Imaging BIRN
32448
28
Generalized PPI Toolbox
30461
29
NITRC Computational Environment (NITRC-CE)
28548
30
3T DWI test-retest reliability dataset
28029
31
BrainMap Database
24955
32
NIDB - Neuroinformatics Database
23818
33
Homer2
22901
34
BIDScoin
22648
35
NeuroDebian
21353
36
Network-Based Statistic (NBS)
20842
37
fMRI-CPCA
20628
38
Anima
20604
39
BrainVisa Morphologist extensions
20359
40
NYU CSC TestRetest
19733
41
UNC 0-1-2 Infant Atlases
18178
42
Mango
17358
43
MITK Diffusion
17079
44
XNAT Extras
17019
45
Neuroimaging Made Easy Blog
16072
46
Automatic Registration Toolbox
15337
47
GRETNA
15064
48
3D Slicer
14460
49
Data Format Tools
14451
50
Surf Ice
14203
51
Freesurfer fsaverage
13885
52
Talairach Daemon
13832
53
Spatially Constrained Parcellation
13752
54
QuickNII - Serial section aligner to volumetric atlases
13691
55
Diffusion Toolkit / TrackVis
13658
56
Brainstorm
13487
57
Brain Biomechanics Imaging Resources
13413
58
Vaa3D and Vaa3D-Neuron
13395
59
SRI24 Atlas: Normal Adult Brain Anatomy
12722
60
DCP：Diffusion Connectome Pipeline
12564
61
dcm2nii
12536
62
libminc - Medical Image NetCDF library
12508
63
CBS High-Res Brain Processing Tools
12487
64
Group ICA Toolbox (GIFT and EEGIFT)
12287
65
MRtrix
12266
66
Melbourne Subcortex Atlas
12232
67
BrainMask Volume Processing Tool
11805
68
Computational Morphometry Toolkit (CMTK)
11564
69
FSL
11402
70
Artifact Detection Tools (ART)
11368
71
3DSlicerLupusLesionModule
11359
72
DWI/DTI Quality Control Tool: DTIPrep
11102
73
CANDI Neuroimaging Access Point
11013
74
Subject Order-Independent Group ICA
10912
75
BrainSuite
10840
76
TumorSim
10810
77
Human Imaging Database (HID)
10792
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10770
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10433
81
Hammer And WML Modules for 3D Slicer
10376
82
NeuroImaging Analysis Kit (NIAK)
10198
83
NODDI Matlab Toolbox
9689
84
SPM for fNIRS toolbox
9669
85
Source Information Flow Toolbox
9639
86
Diffusional Kurtosis Estimator
9507
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9288
88
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9284
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9230
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9108
91
NIfTI
9017
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8889
93
ENIGMA-DTI pipeline
8761
94
Task Independent Fluctuations Discussion
8561
95
SPHARM-PDM Toolbox
8520
96
MARS (Multi-Atlas Robust Segmentation)
8279
97
Robust Brain Extraction (ROBEX)
8172
98
Awake Rat rsfMRI Database
8103
99
iBEAT
7944
100
Center for Functional Neuroimaging Tech
7688