Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
937532
2
Nilearn
744005
3
ITK-SNAP
452526
4
BIDScoin
408486
5
FCP/INDI PRIVATE SITE
361662
6
IIT Human Brain Atlas (v.5.0)
201405
7
fMRI-CPCA
198046
8
MRIcroGL
191778
9
CONN : functional connectivity toolbox
182190
10
1000 Functional Connectomes Project
180673
11
BrainNet Viewer
106928
12
DTI-TK
93434
13
IBSR
79489
14
BioImage Suite
75835
15
Multi-Modal MRI Reproducibility Resource
71146
16
age-ility
68090
17
BXH/XCEDE Tools
67531
18
WFU_PickAtlas
65101
19
NIDB - Neuroinformatics Database
63360
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
56671
21
Solar Eclipse Imaging Genetics tools
52141
22
JIST: Java Image Science Toolkit
51804
23
The Neuro Bureau
48532
24
PANDA: a pipeline tool for diffusion MRI
48154
25
GIFTI
45990
26
BrainFlow
45444
27
3T DWI test-retest reliability dataset
40829
28
Functional Imaging BIRN
40802
29
NITRC Computational Environment (NITRC-CE)
40648
30
EEGLAB
39978
31
fNIRS Data Analysis Environment
39068
32
TOADS-CRUISE Brain Segmentation Tools
39018
33
FreeSurfer
37981
34
Generalized PPI Toolbox
35580
35
BrainMap Database
32990
36
Network-Based Statistic (NBS)
29072
37
Multimodal Visual Consciousness Study Dataset
28750
38
QuickNII - Serial section aligner to volumetric atlases
28342
39
Homer2
27392
40
UNC 0-1-2 Infant Atlases
26127
41
NeuroDebian
25564
42
Anima
25353
43
NYU CSC TestRetest
25263
44
Brain Biomechanics Imaging Resources
24725
45
BrainVisa Morphologist extensions
24642
46
XNAT Extras
22257
47
Neuroimaging Made Easy Blog
19466
48
Melbourne Subcortex Atlas
19430
49
MIITRA atlas
19348
50
Mango
18890
51
CBS High-Res Brain Processing Tools
18675
52
MITK Diffusion
18064
53
Data Format Tools
17929
54
Surf Ice
17847
55
Automatic Registration Toolbox
17829
56
4D UNC Neonatal and Infant Cortical Surface Atlases
17664
57
Vaa3D and Vaa3D-Neuron
17325
58
Fast Nonlocal Means for MRI denoising
17237
59
GRETNA
17105
60
SRI24 Atlas: Normal Adult Brain Anatomy
16989
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
16332
62
Group ICA Toolbox (GIFT and EEGIFT)
15974
63
CANDI Neuroimaging Access Point
15892
64
3D Slicer
15892
65
Diffusion Toolkit / TrackVis
15859
66
Talairach Daemon
15837
67
Spatially Constrained Parcellation
15659
68
BrainMask Volume Processing Tool
15391
69
DCP：Diffusion Connectome Pipeline
15231
70
Computational Morphometry Toolkit (CMTK)
15104
71
3DSlicerLupusLesionModule
14864
72
Freesurfer fsaverage
14808
73
DWI/DTI Quality Control Tool: DTIPrep
14528
74
BrainSuite
14509
75
Awake Rat rsfMRI Database
13938
76
TumorSim
13883
77
Human Imaging Database (HID)
13873
78
Subject Order-Independent Group ICA
13871
79
Brainstorm
13828
80
MRtrix
13717
81
FSL
13343
82
NeuroImaging Analysis Kit (NIAK)
13313
83
Hammer And WML Modules for 3D Slicer
13299
84
dcm2nii
13101
85
libminc - Medical Image NetCDF library
12803
86
ENIGMA-DTI pipeline
12613
87
Artifact Detection Tools (ART)
12603
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12443
89
SVNTest
11835
90
BrainVISA
11633
91
NIfTI
11344
92
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11337
93
SPHARM-PDM Toolbox
11324
94
Task Independent Fluctuations Discussion
11286
95
MARS (Multi-Atlas Robust Segmentation)
11264
96
Graph Theory GLM (GTG) MATLAB Toolbox
11207
97
Diffusional Kurtosis Estimator
11149
98
2008 MICCAI MS Lesion Segmentation Challenge
11095
99
SPM for fNIRS toolbox
11024
100
NODDI Matlab Toolbox
10841