Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
888241
2
Nilearn
548216
3
ITK-SNAP
422714
4
FCP/INDI PRIVATE SITE
305815
5
1000 Functional Connectomes Project
174080
6
IIT Human Brain Atlas (v.5.0)
163112
7
MRIcroGL
162027
8
CONN : functional connectivity toolbox
156425
9
BIDScoin
99139
10
fMRI-CPCA
96661
11
BrainNet Viewer
91170
12
DTI-TK
89806
13
IBSR
73768
14
BioImage Suite
66739
15
Multi-Modal MRI Reproducibility Resource
63342
16
WFU_PickAtlas
61541
17
age-ility
52931
18
BXH/XCEDE Tools
47462
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
44326
20
PANDA: a pipeline tool for diffusion MRI
43461
21
Solar Eclipse Imaging Genetics tools
43070
22
JIST: Java Image Science Toolkit
41880
23
The Neuro Bureau
41685
24
EEGLAB
39795
25
GIFTI
38034
26
FreeSurfer
37859
27
TOADS-CRUISE Brain Segmentation Tools
36748
28
fNIRS Data Analysis Environment
35061
29
Functional Imaging BIRN
35013
30
NIDB - Neuroinformatics Database
34051
31
3T DWI test-retest reliability dataset
32157
32
Generalized PPI Toolbox
32142
33
NITRC Computational Environment (NITRC-CE)
31422
34
BrainMap Database
27266
35
Homer2
24565
36
Network-Based Statistic (NBS)
23267
37
NeuroDebian
22833
38
Anima
22819
39
BrainVisa Morphologist extensions
21864
40
NYU CSC TestRetest
21179
41
UNC 0-1-2 Infant Atlases
20275
42
XNAT Extras
18925
43
QuickNII - Serial section aligner to volumetric atlases
18764
44
Brain Biomechanics Imaging Resources
18445
45
Mango
17982
46
MITK Diffusion
17500
47
BrainFlow
17192
48
Neuroimaging Made Easy Blog
16630
49
Automatic Registration Toolbox
16490
50
Melbourne Subcortex Atlas
16278
51
GRETNA
15868
52
Data Format Tools
15664
53
Surf Ice
15656
54
3D Slicer
14988
55
Vaa3D and Vaa3D-Neuron
14799
56
Diffusion Toolkit / TrackVis
14597
57
Talairach Daemon
14582
58
Spatially Constrained Parcellation
14413
59
CBS High-Res Brain Processing Tools
14311
60
Freesurfer fsaverage
13971
61
Brainstorm
13671
62
DCP：Diffusion Connectome Pipeline
13652
63
SRI24 Atlas: Normal Adult Brain Anatomy
13639
64
Multimodal Visual Consciousness Study Dataset
13504
65
Group ICA Toolbox (GIFT and EEGIFT)
13443
66
Computational Morphometry Toolkit (CMTK)
13018
67
BrainMask Volume Processing Tool
12937
68
dcm2nii
12761
69
libminc - Medical Image NetCDF library
12626
70
MRtrix
12613
71
CANDI Neuroimaging Access Point
12499
72
3DSlicerLupusLesionModule
12298
73
BrainSuite
12093
74
FSL
12072
75
Human Imaging Database (HID)
11900
76
DWI/DTI Quality Control Tool: DTIPrep
11737
77
Artifact Detection Tools (ART)
11670
78
Subject Order-Independent Group ICA
11617
79
TumorSim
11489
80
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
11337
81
Hammer And WML Modules for 3D Slicer
11192
82
4D UNC Neonatal and Infant Cortical Surface Atlases
11161
83
BrainVISA
11115
84
2008 MICCAI MS Lesion Segmentation Challenge
10910
85
NeuroImaging Analysis Kit (NIAK)
10761
86
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10750
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10238
88
NODDI Matlab Toolbox
10223
89
SPM for fNIRS toolbox
10118
90
Diffusional Kurtosis Estimator
10066
91
ENIGMA-DTI pipeline
9973
92
NIfTI
9922
93
Awake Rat rsfMRI Database
9881
94
Source Information Flow Toolbox
9875
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9622
96
Task Independent Fluctuations Discussion
9592
97
MARS (Multi-Atlas Robust Segmentation)
9319
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9297
99
MIITRA atlas
9092
100
SPHARM-PDM Toolbox
8918