Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
946402
2
Nilearn
875092
3
BIDScoin
487707
4
ITK-SNAP
457628
5
FCP/INDI PRIVATE SITE
370366
6
IIT Human Brain Atlas (v.5.0)
209203
7
fMRI-CPCA
204259
8
MRIcroGL
196540
9
CONN : functional connectivity toolbox
187414
10
1000 Functional Connectomes Project
181747
11
BrainNet Viewer
110466
12
DTI-TK
94961
13
IBSR
80357
14
BioImage Suite
76948
15
Multi-Modal MRI Reproducibility Resource
73103
16
BXH/XCEDE Tools
72802
17
age-ility
71393
18
NIDB - Neuroinformatics Database
70170
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66409
20
WFU_PickAtlas
65716
21
JIST: Java Image Science Toolkit
56594
22
Solar Eclipse Imaging Genetics tools
55534
23
BrainFlow
51574
24
The Neuro Bureau
49468
25
PANDA: a pipeline tool for diffusion MRI
49436
26
GIFTI
47362
27
Functional Imaging BIRN
44207
28
NITRC Computational Environment (NITRC-CE)
43764
29
3T DWI test-retest reliability dataset
42874
30
EEGLAB
40018
31
fNIRS Data Analysis Environment
39892
32
TOADS-CRUISE Brain Segmentation Tools
39617
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36250
35
BrainMap Database
33775
36
Multimodal Visual Consciousness Study Dataset
32372
37
QuickNII - Serial section aligner to volumetric atlases
32191
38
Network-Based Statistic (NBS)
31052
39
UNC 0-1-2 Infant Atlases
29184
40
MIITRA atlas
28763
41
Homer2
27843
42
Brain Biomechanics Imaging Resources
26624
43
NeuroDebian
26106
44
Anima
25863
45
NYU CSC TestRetest
25519
46
BrainVisa Morphologist extensions
25113
47
NeuroImaging Analysis Kit (NIAK)
24100
48
TumorSim
23515
49
XNAT Extras
23394
50
DWI/DTI Quality Control Tool: DTIPrep
22619
51
Neuroimaging Made Easy Blog
21021
52
Melbourne Subcortex Atlas
20630
53
Graph Theory GLM (GTG) MATLAB Toolbox
19930
54
4D UNC Neonatal and Infant Cortical Surface Atlases
19908
55
CBS High-Res Brain Processing Tools
19611
56
Mango
19051
57
Data Format Tools
18277
58
Surf Ice
18215
59
MITK Diffusion
18117
60
Automatic Registration Toolbox
18063
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17940
62
Vaa3D and Vaa3D-Neuron
17906
63
SRI24 Atlas: Normal Adult Brain Anatomy
17677
64
Fast Nonlocal Means for MRI denoising
17634
65
GRETNA
17316
66
BrainMask Volume Processing Tool
17263
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16672
68
Group ICA Toolbox (GIFT and EEGIFT)
16498
69
CANDI Neuroimaging Access Point
16459
70
Talairach Daemon
16432
71
SPHARM-PDM Toolbox
16179
72
Diffusion Toolkit / TrackVis
16111
73
3D Slicer
16053
74
Spatially Constrained Parcellation
15908
75
DCP：Diffusion Connectome Pipeline
15578
76
Subject Order-Independent Group ICA
15501
77
Freesurfer fsaverage
15431
78
Computational Morphometry Toolkit (CMTK)
15334
79
3DSlicerLupusLesionModule
15305
80
BrainSuite
15004
81
Awake Rat rsfMRI Database
14740
82
Human Imaging Database (HID)
14576
83
Hammer And WML Modules for 3D Slicer
13903
84
MRtrix
13900
85
Brainstorm
13835
86
FSL
13584
87
ENIGMA-DTI pipeline
13448
88
SVNTest
13444
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13400
90
dcm2nii
13154
91
ShapePopulationViewer
13036
92
MARS (Multi-Atlas Robust Segmentation)
12881
93
libminc - Medical Image NetCDF library
12824
94
Artifact Detection Tools (ART)
12794
95
BrainVISA
11763
96
NIfTI
11719
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11694
98
Nighres
11614
99
Task Independent Fluctuations Discussion
11553
100
SPM for fNIRS toolbox
11387