Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Downloads
1
Nilearn
1189774
2
BIDScoin
1159508
3
MRIcron
1036432
4
ITK-SNAP
483714
5
FCP/INDI PRIVATE SITE
408002
6
IIT Human Brain Atlas (v.5.0)
250568
7
CONN : functional connectivity toolbox
241667
8
MRIcroGL
216980
9
fMRI-CPCA
211969
10
1000 Functional Connectomes Project
186716
11
BrainNet Viewer
137195
12
BXH/XCEDE Tools
122555
13
NIDB - Neuroinformatics Database
114174
14
DTI-TK
100721
15
age-ility
98324
16
BioImage Suite
89614
17
Solar Eclipse Imaging Genetics tools
86313
18
IBSR
85694
19
BrainFlow
83949
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
83449
21
JIST: Java Image Science Toolkit
82066
22
Multi-Modal MRI Reproducibility Resource
81011
23
WFU_PickAtlas
67625
24
GIFTI
63876
25
NITRC Computational Environment (NITRC-CE)
61773
26
PANDA: a pipeline tool for diffusion MRI
57738
27
The Neuro Bureau
54383
28
3T DWI test-retest reliability dataset
53166
29
Multimodal Visual Consciousness Study Dataset
52066
30
Functional Imaging BIRN
52058
31
Standard Amygdalar fMRI Probe Tasks
50468
32
TOADS-CRUISE Brain Segmentation Tools
46338
33
Generalized PPI Toolbox
46234
34
QuickNII - Serial section aligner to volumetric atlases
45134
35
fNIRS Data Analysis Environment
44181
36
MIITRA atlas
41367
37
Network-Based Statistic (NBS)
40607
38
BrainMap Database
40282
39
EEGLAB
40121
40
NeuroImaging Analysis Kit (NIAK)
38054
41
FreeSurfer
38005
42
Brain Biomechanics Imaging Resources
37413
43
UNC 0-1-2 Infant Atlases
36580
44
Graph Theory GLM (GTG) MATLAB Toolbox
35828
45
Melbourne Subcortex Atlas
35425
46
DWI/DTI Quality Control Tool: DTIPrep
34358
47
TumorSim
32709
48
CBS High-Res Brain Processing Tools
32606
49
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
32415
50
Homer2
32255
51
NYU CSC TestRetest
29594
52
NeuroDebian
29084
53
Anima
28778
54
BrainVisa Morphologist extensions
28684
55
4D UNC Neonatal and Infant Cortical Surface Atlases
28425
56
XNAT Extras
27404
57
SPHARM-PDM Toolbox
25917
58
Neuroimaging Made Easy Blog
24422
59
SRI24 Atlas: Normal Adult Brain Anatomy
24019
60
BrainMask Volume Processing Tool
23906
61
CANDI Neuroimaging Access Point
23577
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
23334
63
ANDA
23138
64
3DSlicerLupusLesionModule
22068
65
ShapePopulationViewer
22027
66
Fast Nonlocal Means for MRI denoising
21353
67
Data Format Tools
21345
68
Vaa3D and Vaa3D-Neuron
21153
69
MRtrix
21025
70
Awake Rat rsfMRI Database
20011
71
Group ICA Toolbox (GIFT and EEGIFT)
19966
72
Surf Ice
19965
73
Mango
19885
74
Hammer And WML Modules for 3D Slicer
19533
75
Multi-site Frequency Drift MR Spectroscopy
19515
76
Automatic Registration Toolbox
19438
77
AutoSeg
19407
78
NeuroDOT
18825
79
MITK Diffusion
18670
80
Subject Order-Independent Group ICA
18348
81
Human Imaging Database (HID)
18226
82
Talairach Daemon
18111
83
GRETNA
18068
84
DCP：Diffusion Connectome Pipeline
17795
85
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17769
86
ENIGMA-DTI pipeline
17756
87
Freesurfer fsaverage
17519
88
BrainSuite
17472
89
Diffusion Toolkit / TrackVis
17454
90
3D Slicer
17420
91
Computational Morphometry Toolkit (CMTK)
17276
92
Spatially Constrained Parcellation
17141
93
ReproNim: A Center for Reproducible Neuroimaging Computation
16643
94
MARS (Multi-Atlas Robust Segmentation)
16412
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
16129
96
3DMeshMetric
15335
97
Maps4Mipav (Exploratory JIST)
15117
98
FSL
15008
99
Nutil - Neuroimaging utilities
14833
100
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
14734