A friendly reminder for our users:

Non-CLP versions of the SPHARM-PDM commands that can be used as individual steps for shape analysis are no longer debugged and/or mantained. SegPostProcess, ParaToSPHARMMesh and GenParaMesh are deprecated versions of SegPostProcessCLP, ParaToSPHARMMeshCLP and GenParaMeshCLP. For your own benefit, please use the CLP versions.

Best regards,
BEATRIZ

Hi Beatriz,

 After your warning, ı tried to use the CLP versions of shharm-pdm. But ı have some problems.

 1) ./SegPostProcessCLP 1.gipl 01.gipl
 
 is it ok? 

 2) I can run the GenParaMeshCLP function but ı cant open the outputs of GenParaMeshCLP in KWMeshvisu. 

 Here is my command :  ./GenParaMeshCLP 01.gipl 01_para.meta 01_surf.meta --iter 1000 --label 1 

 Here is the error code which ı got from KWMeshvisu :
" NDims require and not defined.
  MetaObject: Read: MET_Read Failed
  MetaMesh M_Read: Error parsing file
  Aborting: No Points in GRID "

3) I cant run the ParatoSPHARMMeshCLP, my command like ;

 ./ParatoSPHARMMeshCLP 01_surf.meta 01_para.meta --subdivLevel 10 --spharmDegree 12 -flipTemplate template.coef --regTemplate template.meta ,

 
Any help will be greatful. 

Onur..

Hi Onur,

The best thing to evaluate the order of your arguments is to use --help. This help will display the right order for the arguments. Also, something to keep in mind is that all the CLP commands use VTK and not META as Mesh Input (you will have to convert them)

I believe the order in SegPosProcess does not change you have to write just   (required)  Input image to be filtered (Tissue segmentation file)
and then  (required)  Output filtered

You are getting an error message when running GenParaMeshCLP because the order of the arguments is not correct, if you type GenParaMeshCLP --help you will see the right order is: label, iterations, input, output. The same applies to ParaToSPHARMMeshCLP, that you will have to type --help to verify ordering of the arguments.



I hope that helps.
Regards,

BEATRIZ

Hi Beatriz, Thanks for response,

  I used help of all function but ı didnt think that the order is important. I changed my command. And ı didnt got any error.
  
1) SegPostProcessCLP is still same.

 ./SegPostProcessCLP 1.gipl 01.gipl  
 
2)
  ./GenParaMeshCLP --label 1 --iter 100 01.gipl 01_para.vtk 01_surf.vtk
 
3)
  ./ParaToSHPARMMeshCLP --regTemplate template_surfSPHARM.vtk --regTemplateFileOn --filpTemplate template_surfSPHARM.coef --flipTemplateOn --spharmDegree 12 --subdivLevel 10 01_para.vtk 01_surf.vtk /home/onur/Desktop/clp

  
  Are these usage correct ? do I make a mistake ? 

and after ParaToSPHARMMeshCLP, my outputs files name begin with spharm. spharm.coef , spharm_procalign.vtk ...

How can ı chance the  file name ? I cant understand from --help.

Thanks.. 

 Regards,
 Onur...

Hi again Beatriz , >>>How can ı chance the  file name ? I cant understand from --help.  I fix the problem. if there isnt a mistake in usage, ı began to use clp funciton on my data.Thanks..  

What do you mean by changing the file name? Do you mean renaming your file? I am confused since you mention the clp help.