Hello, everyone! I have a problem using the SPHARM-PDM on 3D Slicer(v4.4.0).
I follow the tutorial . I changed the filepath in the .csv file like this:

Gender InputFile1 Input File Description
0 /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/origData/groupA_01_hippo.gipl.gz none
0 /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/origData/groupA_02_hippo.gipl.gz none
1 /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/origData/groupB_01_hippo.gipl.gz none
1 /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/origData/groupB_02_hippo.gipl.gz none

and set the other parameters as the tutorial said. But I got error when apply the shape analysis:

Shape Analysis Module terminated with a fault.

and here are more details:

Found CommandLine Module, target is /home/soda/.config/NA-MIC/Extensions-23774/SPHARM-PDM/lib/Slicer-4.4/cli-modules/ShapeAnalysisModule
ModuleType: CommandLineModule
Shape Analysis Module command line:
/home/soda/.config/NA-MIC/Extensions-23774/SPHARM-PDM/lib/Slicer-4.4/cli-modules/ShapeAnalysisModule --RescaleSegPostProcess --sx 0.5 --sy 0.5 --sz 0.5 --label 1 --NumberofIterations 1000 --SubdivLevelValue 10 --SPHARMDegreeValue 15 --thetaIterationValue 100 --phiIterationValue 100 --medialMesh --columVolumeFile 0 --varX 10 --varY 10 --varZ 10 --regTemplate None --flipTemplate None --paraOutTemplate --noFlip --HorizontalGridPara 5 --VerticalGridPara 5 --UseProcalign --startRegularization 10 --endRegularization 0.01 --optimizationIt 200 --RelativeWeight 1 /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/origData/groupA_01_hippo.gipl.gz /home/soda/Downloads/SPHARM_Tutorial_Data_July2015/output
Shape Analysis Module standard output:
------ Shape Analysis Module start -----
Computing ShapeAnalysisModule...
/home/soda/Downloads/SPHARM_Tutorial_Data_July2015/output/
/home/soda/Downloads/SPHARM_Tutorial_Data_July2015/output/ShapeAnalysisModule.bms

Do you know how to fix it?
Thanks for your reply!

Hi Soda,


Thanks for your question. We have migrated our forums to Discourse, could you please post your question here? https://discourse.slicer.org/c/community/slicer-salt
Best,


Beatriz