I am looking for a code where I can get the IBSR_nifti_stripped output using the IBSR_ana.zip data. Can you share a document or code containing these preprocessing steps?

Thank you 
Fatih

Hello Fatih,

I don't understand what you are asking for.  Could you be more specific please?

Perhaps one of the README files has the information you are looking for.

Thanks,

Andy.

Dear Andy,

I developed a segmentation network using IBSR data.
This network takes skull-stripped data as input and maps it to labels.
Everything is fine.

However, I cannot apply this segmentation to the MRI data I have.
Because the skull was not stripped in the MRI data I have.
So I would like to learn how to do the skull stripping or other preprocessing code (or document) required to obtain skull-stripped data?

There are many skull stripping codes on the internet. However, I cannot use them. I need the code for the stripping done in IBSR.

Thank you

Hi Fatih,

There was no skull stripping done to the original IBSR data.  The regions of interest were drawn manually.  Skull stripping on the MRI scan where the labels were drawn can be done by combining the manually drawn labels as a mask.

Andy.