open-discussion > Couldn't able to read ground truth image volume properly
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May 17, 2023  08:05 AM | Madhumita Ray - Jadavpur University
Couldn't able to read ground truth image volume properly
Hi,

I am reading the image volume and the ground truth image volume at the same way but I am facing the problem to identify the CSF region at the groundtruth image volume. My Groundtruth images showed that there is no CSF at the boundary region only at the centre but at the original images there are CSF at the boundary region, though I am reading the two volumes at the same way. Please help me regarding this issue. 

Thank you.

Regards
Madhumita Ray
May 17, 2023  01:05 PM | Andrew Worth
RE: Couldn't able to read ground truth image volume properly
You'll have to provide more details.

Andy.
May 22, 2023  06:05 AM | Madhumita Ray - Jadavpur University
RE: Couldn't able to read ground truth image volume properly
Hi Andy,

I am working with .nii files. The header of the files cannot be able to read properly. Kindly help me to read the header of the image voluve as well as the mask volume. Which README file  storing the header of the .nii volume.

I can find out two README file in the .zip file.

one README file showing

Torsten Rohlfing has released these images into the public domain. Any use of them should reference this paper:

T. Rohlfing, "Image similarity and tissue overlaps as surrogates for image registration accuracy: Widely used but unreliable," IEEE Transactions on Medical Imaging, vol. 31, no. 2, pp. 153-163, 2012.


Another file is showing
  Mac OS X 2 y « ATTR7Šø « œ > œ com.apple.TextEncoding utf-8;134217984

Where is the actual README file for .nii image volume.

please help me as early as possible.
May 22, 2023  06:05 AM | Madhumita Ray - Jadavpur University
RE: Couldn't able to read ground truth image volume properly
Is it the actual README file?
Attachment: README.txt