open-discussion > Using imcalc for lesion overlap mapping
Showing 1-4 of 4 posts
Jul 19, 2019 09:07 PM | keristephenson - University of Manchester
Using imcalc for lesion overlap mapping
I want to use the imcalc tool to produce a lesion overlap map but
when I launch it using SPM 12 I get this error message
Error in spm_path_fix (line 83)
addpath_recurse(dir_name)
Error in imcalc (line 44)
spm_path_fix('imcalc.m'); % spm_path_fix is by R
I have downloaded imcalc and placed it in the SPM toolbox folder as requested.
Error in spm_path_fix (line 83)
addpath_recurse(dir_name)
Error in imcalc (line 44)
spm_path_fix('imcalc.m'); % spm_path_fix is by R
I have downloaded imcalc and placed it in the SPM toolbox folder as requested.
Aug 22, 2019 01:08 PM | Gabriela Dziegiel - Nencki Institute of Experimental Biology PAS
RE: Using imcalc for lesion overlap mapping
Hi!
I have exactly the same problem. Have you found any solution for that?
Cheers!
Gabriela
I have exactly the same problem. Have you found any solution for that?
Cheers!
Gabriela
Aug 22, 2019 02:08 PM | keristephenson - University of Manchester
RE: Using imcalc for lesion overlap mapping
I didn't find a solution using imcalc. I used the ALI toolbox for
SPM which provides a utility for lesion overlap mapping which is
what I wanted it for. It is available from Mohamed Seghier (mseghier@gmail.com)
best wishes
Keri
best wishes
Keri
Jun 12, 2024 01:06 PM | mitja nikolaus - CerCo, CNRS
RE: Using imcalc for lesion overlap mapping
I ran into the same error, the problem was that I didn't add all the subfolders of the imcalc toolbox to my matlab path.
I was running
addpath ~/apps/spm12/toolbox/imcalc
Instead of:
addpath(genpath("~/apps/spm12/toolbox/imcalc"))
Using the latter I was able to start imcalc.