nitrc-ce > Parallel processing
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Aug 2, 2016 02:08 AM | Richard Morris
Parallel processing
Hi, I'm trying to run bedpostX (FSL) using SGE to parallelize the
job. However I can't seem to configure SGE to recognize all the
CPUs. When I open qmon and update the settings to reflect my
current CPU configuration, it tells me I can't make changes because
I'm not a manager. I've tried running sudo qmon, but then it
returns an error: can't open display.
Any hints?
Ta,
Any hints?
Ta,
Aug 2, 2016 10:08 AM | David Kennedy
RE: Parallel processing
Try:
> xhost localhost
> sudo qmon
I thought we had that fixed, but perhaps not.
DK
> xhost localhost
> sudo qmon
I thought we had that fixed, but perhaps not.
DK
Aug 2, 2016 12:08 PM | Richard Morris
RE: Parallel processing
thanks David, it turns out if I run
sudo qconf -am username
then that will add my username as a manager without needing the display (X11?). That tells me it has added my username as a manager and after that I can run qmon and make changes just fine.
Hope this helps someone else,
Rich
sudo qconf -am username
then that will add my username as a manager without needing the display (X11?). That tells me it has added my username as a manager and after that I can run qmon and make changes just fine.
Hope this helps someone else,
Rich
Aug 2, 2016 01:08 PM | David Kennedy
RE: Parallel processing
That's good to know; thanks.
Can you tell me what NITRC-CE version you're running? (NITRC-CE version is displayed on the bottom of the NITRC-CE web page).
Can you tell me what NITRC-CE version you're running? (NITRC-CE version is displayed on the bottom of the NITRC-CE web page).