sdm-help-list > Different multimodal algorithms in SDM-PSI 6.21 and 6.22
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Dec 13, 2022  04:12 AM | Feng Liu
Different multimodal algorithms in SDM-PSI 6.21 and 6.22
Dear SDM experts,

I found different multimodal algorithms used in SDM-PSI 6.21 and 6.22. I am wondering why these algorithms are different, and which algorithm you recommend? In addition, I thought the multimodal algorithm in SDM-PSI 6.22 is different from your original articles "Multimodal meta-analysis of structural and functional brain changes in first episode psychosis and the effects of antipsychotic medication" and "A General Approach for Combining Voxel-Based Meta-Analyses Conducted in
Different Neuroimaging Modalities". Could you explain the reason, and which one is correct?

Best,
Feng

######################PSI6.21#############################################
getprogdir entry argv F:\software\SdmPsiGui-win64-v6.21\bin\windows64/sdm_core
a(imgcalc) [F.-DATA-meta-20221212_pos_p] = [F.-DATA-meta-20221212_p] * 1
WARNING: File 'F.-DATA-meta-20221212_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_neg_p] = [F.-DATA-meta-20221212_p] * -1
WARNING: File 'F.-DATA-meta-20221212_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_p] = [F.-DATA-meta-20221212_pos_p] >= 0.90000 ? [F.-DATA-meta-20221212_pos_p] : 0
WARNING: File 'F.-DATA-meta-20221212_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_neg_p] = [F.-DATA-meta-20221212_neg_p] >= 0.90000 ? [F.-DATA-meta-20221212_neg_p] : 0
WARNING: File 'F.-DATA-meta-20221212_neg_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [MyTest_2000_30_pos_p] = [MyTest_2000_30_p] * 1
WARNING: File 'MyTest_2000_30_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [MyTest_2000_30_neg_p] = [MyTest_2000_30_p] * -1
WARNING: File 'MyTest_2000_30_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [MyTest_2000_30_pos_p] = [MyTest_2000_30_pos_p] >= 0.90000 ? [MyTest_2000_30_pos_p] : 0
WARNING: File 'MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [MyTest_2000_30_neg_p] = [MyTest_2000_30_neg_p] >= 0.90000 ? [MyTest_2000_30_neg_p] : 0
WARNING: File 'MyTest_2000_30_neg_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] = [F.-DATA-meta-20221212_pos_p] * [MyTest_2000_30_pos_p]
WARNING: File 'F.-DATA-meta-20221212_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] = [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] >= 0.5 ? [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] : 0
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [temp1] = 1 - [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p]
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [temp2] = log([F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p])
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [temp2] = [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] * [temp2]
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [temp1] = [temp1] + [temp2]
WARNING: File 'temp1' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] = 1 - [temp1]
WARNING: File 'temp1' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250] = [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] >= 0.99750 ? [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p] : 0
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025] = clusters from [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250] with peak >= 0.99975
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025_10] = clusters from [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025] with size >= 10
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
a(imgcalc) Getting blobs and atlas information from [F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025_10]
getprogdir entry argv F:\software\SdmPsiGui-win64-v6.21\bin\windows64/imgcalc
getprogdir exit pdir F:\software\SdmPsiGui-win64-v6.21
WARNING: File 'F.-DATA-meta-20221212_pos_MyTest_2000_30_pos_p_0.00250_0.00025_10' was not found or is not a NIfTI file (unknown extension).
The program will close as this problem could cause fatal errors.
getprogdir exit pdir F:\software\SdmPsiGui-win64-v6.21
Home dir C:\Users\liufeng\sdm.conf
iExecuting multi with sname1 F.-DATA-meta-20221212 sname2 MyTest_2000_30 thr_val 0.002500 peak_thr 0.000250 size_thr 10 error_pval > reduce_fnr tolerable_p 0.100000
aCalling web browser to display the report
Prior open browser
After open browser
o
aCalling MRICron to display 3D results
c
wmricron program not found
Home dir C:\Users\liufeng\sdm.conf
Home dir C:\Users\liufeng\sdm.conf
wParser warning: argument 'threshold value' missing or incorrect, it will be set to '0.0025'.
wParser warning: argument 'peak height threshold' missing or incorrect, it will be set to '0.00025'.
wParser warning: argument 'extent threshold' missing or incorrect, it will be set to '10'.
wParser warning: argument 'assume error in p values' missing or incorrect, it will be set to '1 (true)'.
wParser warning: argument 'reduce FNR' missing or incorrect, it will be set to '2 (true)'.
wParser warning: argument 'tolerable p-values' missing or incorrect, it will be set to '0.1'.

#########################PSI6.22#############################################
Home dir C:\Users\liufeng\sdm.conf
aComputing multimodal for SDM-PSI
aImgcalc computations
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1pos] = [F:/DATA/meta/20221212/analysis_MyTest_2000_30/MyTest_2000_30_z] >= 0 ? [F:/DATA/meta/20221212/analysis_MyTest_2000_30/MyTest_2000_30_z] : 0
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1neg] = [F:/DATA/meta/20221212/analysis_MyTest_2000_30/MyTest_2000_30_z] <= 0 ? [F:/DATA/meta/20221212/analysis_MyTest_2000_30/MyTest_2000_30_z] : 0
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_2pos] = [F:/DATA/meta/20221212/analysis_MyTest_3T/MyTest_3T_z] >= 0 ? [F:/DATA/meta/20221212/analysis_MyTest_3T/MyTest_3T_z] : 0
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_2neg] = [F:/DATA/meta/20221212/analysis_MyTest_3T/MyTest_3T_z] <= 0 ? [F:/DATA/meta/20221212/analysis_MyTest_3T/MyTest_3T_z] : 0
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1posinv] = [F:/DATA/meta/20221212/multimodal/tmp_1pos] * -1
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1neginv] = [F:/DATA/meta/20221212/multimodal/tmp_1neg] * -1
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1pos_2pos] = min([F:/DATA/meta/20221212/multimodal/tmp_1pos], [F:/DATA/meta/20221212/multimodal/tmp_2pos])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1posinv_2neg] = max([F:/DATA/meta/20221212/multimodal/tmp_1posinv], [F:/DATA/meta/20221212/multimodal/tmp_2neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1neginv_2pos] = min([F:/DATA/meta/20221212/multimodal/tmp_1neginv], [F:/DATA/meta/20221212/multimodal/tmp_2pos])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/tmp_1neg_2neg] = max([F:/DATA/meta/20221212/multimodal/tmp_1neg], [F:/DATA/meta/20221212/multimodal/tmp_2neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/pos_z] = [F:/DATA/meta/20221212/multimodal/tmp_1pos_2pos] + [F:/DATA/meta/20221212/multimodal/tmp_1posinv_2neg]
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/neg_z] = [F:/DATA/meta/20221212/multimodal/tmp_1neginv_2pos] + [F:/DATA/meta/20221212/multimodal/tmp_1neg_2neg]
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/uncorrp] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/uncorrp], [F:/DATA/meta/20221212/analysis_MyTest_3T/uncorrp])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/uncorrp_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/uncorrp], [F:/DATA/meta/20221212/analysis_MyTest_3T/uncorrp_neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/uncorrp] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/uncorrp_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/uncorrp])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/uncorrp_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/uncorrp_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/uncorrp_neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/corrp_voxel] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_voxel], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_voxel])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/corrp_voxel_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_voxel], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_voxel_neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/corrp_voxel] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_voxel_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_voxel])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/corrp_voxel_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_voxel_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_voxel_neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/corrp_tfce] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_tfce], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_tfce])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_pos/corrp_tfce_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_tfce], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_tfce_neg])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/corrp_tfce] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_tfce_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_tfce])
o
a(imgcalc) [F:/DATA/meta/20221212/multimodal/analysis_neg/corrp_tfce_neg] = min([F:/DATA/meta/20221212/analysis_MyTest_2000_30/corrp_tfce_neg], [F:/DATA/meta/20221212/analysis_MyTest_3T/corrp_tfce_neg])
o
oImgcalc computations
aGenerating conf files
oGenerating conf files
dComputing multimodal for SDM-PSI