Hi,
When I convert ima.files into nifti from an interleaved acquisition using MRIcroGL, does slice timing correction happen? When I check the output of the conversion from ima.file to nifti on AFNI, the timing of the slices seems to have been corrected.
Thanks
dcm2niix will attempt to losslessly convert DICOM to NIfTI. Therefore, it does not alter your images for motion or slice times. For many manufacturers (GE and Siemens) the slice times will be recorded in the BIDS JSON file so you can use your favorite tool to slice time correct your data. Some manufacturers (e.g. Philips) do no include slice times in the source DICOMs.
Originally posted by Chris Rorden:
dcm2niix will attempt to losslessly convert DICOM to NIfTI. Therefore, it does not alter your images for motion or slice times. For many manufacturers (GE and Siemens) the slice times will be recorded in the BIDS JSON file so you can use your favorite tool to slice time correct your data. Some manufacturers (e.g. Philips) do no include slice times in the source DICOMs.
Thank you for your quick reply. How would you recommend I check that the slice timing correction has adequately been done?
thanks
I would contact the message forums of the tool you used for the slice time correction - AFNI, FSL and SPM all have their own mechanisms and contact methods (e.g. jiscmail). dcm2niix is for image conversion, not processing, so this question is out of scope for this forum.