dki-questions > DKE Crashes with "Permission Denied" - Solved!!
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Oct 24, 2019 05:10 PM | Rees Ridout
DKE Crashes with "Permission Denied" - Solved!!
When running DKE on the GUI on Windows, I select the 4D NIFTI file,
and the program says "processing" for a while, and then responds
with
"Processing failed with error message: Permission Denied"
The command prompt reads the following:
% Thu Oct 24 01:06:09 PM
studydir = 'D:/CIVM_Apps/DKE/dki_example_data_nifti/';
subject_list = {''};
preprocess_options.format = 'nifti';
preprocess_options.fn_nii = '4Drdki_0.nii';
fn_img_prefix = 'rdki';
bval = [0 1000 2000];
ndir = 30;
idx_1st_img = 1;
Kmin = 0;
NKmax = 3;
Kmin_final = 0;
Kmax_final = 3;
T = 50;
find_brain_mask_flag = 1;
dki_method.no_tensor = 0;
dki_method.linear_weighting = 1;
dki_method.linear_constrained = 1;
dki_method.nonlinear = 0;
dki_method.linear_violations = 0;
dki_method.robust_option = 0;
dki_method.noise_tolerance = 0.09;
dti_method.dti_flag = 0;
dti_method.dti_only = 0;
dti_method.no_tensor = 0;
dti_method.linear_weighting = 1;
dti_method.b_value = 1e+003;
dti_method.directions{1} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
dti_method.robust_option = 0;
dti_method.noise_tolerance = 0.09;
fn_noise = '';
fwhm_img = [3.375 3.375 3.375];
fwhm_noise = [0 0 0];
median_filter_method = 2;
map_interpolation_method.flag = 1;
map_interpolation_method.order = 1;
map_interpolation_method.resolution = 1;
fn_gradients = 'gradient_vectors_siemens30.dat';
idx_gradients{1} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
idx_gradients{2} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
command line: dke DKEParameters.dat
Diffusional Kurtosis Estimator (DKE) version 2.6.0, February 2015
Error using dke (line 145)
Cannot open output file D:\CIVM_Apps\DKE\dki_example_data_nifti\dke.log! Output
directory does not exist or is write-protected.
"Processing failed with error message: Permission Denied"
The command prompt reads the following:
% Thu Oct 24 01:06:09 PM
studydir = 'D:/CIVM_Apps/DKE/dki_example_data_nifti/';
subject_list = {''};
preprocess_options.format = 'nifti';
preprocess_options.fn_nii = '4Drdki_0.nii';
fn_img_prefix = 'rdki';
bval = [0 1000 2000];
ndir = 30;
idx_1st_img = 1;
Kmin = 0;
NKmax = 3;
Kmin_final = 0;
Kmax_final = 3;
T = 50;
find_brain_mask_flag = 1;
dki_method.no_tensor = 0;
dki_method.linear_weighting = 1;
dki_method.linear_constrained = 1;
dki_method.nonlinear = 0;
dki_method.linear_violations = 0;
dki_method.robust_option = 0;
dki_method.noise_tolerance = 0.09;
dti_method.dti_flag = 0;
dti_method.dti_only = 0;
dti_method.no_tensor = 0;
dti_method.linear_weighting = 1;
dti_method.b_value = 1e+003;
dti_method.directions{1} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
dti_method.robust_option = 0;
dti_method.noise_tolerance = 0.09;
fn_noise = '';
fwhm_img = [3.375 3.375 3.375];
fwhm_noise = [0 0 0];
median_filter_method = 2;
map_interpolation_method.flag = 1;
map_interpolation_method.order = 1;
map_interpolation_method.resolution = 1;
fn_gradients = 'gradient_vectors_siemens30.dat';
idx_gradients{1} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
idx_gradients{2} = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30];
command line: dke DKEParameters.dat
Diffusional Kurtosis Estimator (DKE) version 2.6.0, February 2015
Error using dke (line 145)
Cannot open output file D:\CIVM_Apps\DKE\dki_example_data_nifti\dke.log! Output
directory does not exist or is write-protected.
Oct 24, 2019 06:10 PM | Emilie McKinnon - MUSC
RE: DKE Crashes with "Permission Denied" - Solved!!
Hi Rees,
This might be silly, but would you mind double checking if the path 'D:/CIVM_Apps/DKE/dki_example_data_nifti/' is spelled correctly and exists?
The program is trying to create the log file in that location and is having issues.
Best,
Emilie
This might be silly, but would you mind double checking if the path 'D:/CIVM_Apps/DKE/dki_example_data_nifti/' is spelled correctly and exists?
The program is trying to create the log file in that location and is having issues.
Best,
Emilie