Dear all,


I'm using your mICA toolbox with 14 subjects. When I run the reproducibility step the following error occurs:

FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/local/fsl/bin/fsl_sub -N mICASplitHalf_step3 -T 30 -l /home/user/test_mICA/Reproducibility/tmp_log -j 7156 python ./py/ic_corr.py /home/user/test_mICA/Reproducibility 50 4-8
ERROR MESSAGE:
Traceback (most recent call last):
File "./py/ic_corr.py", line 39, in
from munkres import Munkres, make_cost_matrix
File "/usr/local/lib/python2.7/dist-packages/munkres.py", line 79
def pad_matrix(self, matrix: Matrix, pad_value: int=0) -> Matrix:
^
SyntaxError: invalid syntax
END OF ERROR MESSAGE

Any idea about this error?

Thanks,
Lorenzo

Dear Lorenzo,

It seems an error when loading the munkres package in Python. You could try upgrading munkres with "pip install --upgrade munkres" and then try again. Let me know if it helped!

Best wishes,

Jorge

Dear Jorge,

I tried to upgrade munkres as you suggested, but the tool returned the same error.
Do you think it could be a pronlem due to python version?

Any suggestions?

Lorenzo

It could be a problem with your Python version. What version are you using? And Munkres?
Do you get the same error if you open the Python-terminal and only try to import munkres ("from munkres import Munkres, make_cost_matrix")?

I'm using Python 2.7.17, and yes, I got the same error importing munkres from python terminal.

In our computers we are using

Python 2.7.6 and Munkres 1.0.8
Python 2.7.12 and Munkres 1.0.12

Looking at the Munkres documentation (http://software.clapper.org/munkres/#get...) I see the following:

"As of version 1.1.0, munkres no longer supports Python 2. If you need to use it with Python 2, install an earlier version (e.g., 1.0.12): pip install munkres==1.0.12"

What version of munkres do you have (pip show munkres)? You could try to install 1.0.12 to see if it works.

I had Munkres 1.0.2. Now I installed version 1.0.12 and with python 2.7 it works.

Thanks a lot