hi,
I'm trying to compare different brain areas in mode A versus mode B using X, Y, Z coordinates and Z values provided in various research articles. Specifically, I would like to create a diagram with two layers: one representing brain areas associated with depression and another layer to compare and identify similarities between depression and cardiac activation.
I've gone through the manual, but I'm still unsure about the process of creating this diagram. I was wondering if someone understands how to achieve this using MRIcron. Any guidance, specific steps, or tips would be greatly appreciated
You will want to save your contrast image in NIfTI format, and then you can load the image just like a statistical map. For example here
http://brainmap.org/software.html#Sleuth
Once you create the NIfTI image "MyMap.nii" you could visualize it, for example the MRIcroGL script:
import gl
gl.resetdefaults()
gl.loadimage('spm152')
gl.overlayload('myMap')
I am trying to create 2 different VOIs in different colors overlaid on TLRC tamplate (see attached template file). I'm able to create different VOIs and see them on the template, but not with different colors. also, it looks like only 2 points can be seen on a single VOI each time. Saving they seperately as NIfTI files and trying to open them doesn't work either. (dissapear/change color).
do you know this problen and how to fix it?
thank you!
You can use MRIcroGL's Draw/DrawColor menu items to choose multiple colors:
https://www.nitrc.org/plugins/mwiki/inde...
alternatively, you can use NiiVue
https://niivue.github.io/niivue/features...