Docker image is avaiable at https://hub.docker.com/repository/docker/diffdocker/fbirnqa.

You can create a singularity contaner using the docker image (recommended)



##Run the docker image

docker run fbirnqa:1.11.14 "input dir" "output dir"

##Create a singularity container

singularity build fbirnqa-1.11.14.sif docker://diffdocker/fbirnqa:1.11.14



##Run using the singularity container

singularity run --cleanenv fbirnqa.sif "input dir" "output dir"
You may have to bind the data directory.




Chandana Kodiweera