After I managed to install shapeAnalysisMANCOVA, I have problems in executing the command. I'm trying it out on the tutorial data. 

I tried using minimal syntax:
shapeAnalysisMANCOVA -n 1000 list.txt

--------------------- The output it produces -----------------

input file specified: list.txt
filename: list.txt numIndependent: 0
Num Subjects: 4

data in group_type 0 has been relabeled: -1 --> group A = -1 ; 1 --> group B = 1
#(A)= 2; #(B)= 2
/home/memory/nilmul/ShaTut/out/Mesh/Para/groupB_01_hippo_ppSPHARM_ellalign.vtk -1 1
/home/memory/nilmul/ShaTut/out/Mesh/Para/groupB_02_hippo_ppSPHARM_ellalign.vtk -1 1
/home/memory/nilmul/ShaTut/out/Mesh/Para/groupA_01_hippo_ppSPHARM_ellalign.vtk 1 1
/home/memory/nilmul/ShaTut/out/Mesh/Para/groupA_02_hippo_ppSPHARM_ellalign.vtk 1 1
reading Mesh /home/memory/nilmul/ShaTut/out/Mesh/Para/groupB_01_hippo_ppSPHARM_ellalign.vtk - .vtk
reading Mesh /home/memory/nilmul/ShaTut/out/Mesh/Para/groupB_02_hippo_ppSPHARM_ellalign.vtk - .vtk
reading Mesh /home/memory/nilmul/ShaTut/out/Mesh/Para/groupA_01_hippo_ppSPHARM_ellalign.vtk - .vtk
reading Mesh /home/memory/nilmul/ShaTut/out/Mesh/Para/groupA_02_hippo_ppSPHARM_ellalign.vtk - .vtk
No statistic type selected, defaulting to Hotelling.
Now running nonparametric tests:
Performing MANCOVA permutation testing.
Using 1000 permutations.
Completed MANCOVA permutation testing.
fdr thresh (MANCOVA) is = 0
Runtime was 0 minute(s) and 7 second(s).
terminate called after throwing an instance of 'std::out_of_range'
what(): basic_string::erase
Aborted

-------------------------

It produces some of the output files:  
list.txt_DiffMagnitude.txt
list.txt_diffMesh.txt
list.txt_GLM_correctedMean.meta
list.txt_mancovaBonferroniP.txt
list.txt_mancovaFDRP.txt
list.txt_mancovaRawP.txt
list.txt_meanAB.txt
list.txt_meanAll_uncorrected.meta
list.txt_meanAll_uncorrected.vtk
list.txt_meanA.meta
list.txt_meanA.txt
list.txt_meanB.meta
list.txt_meanB.txt
list.txt_normProjections.txt 
----------
Is it normal that  only one of the meshes is in .vtk format but the other ones in .meta?

Since it crashes I'm not quite sure whether I can the results now. Any ideas where the crash could come from?

Thanks again!