Hi again,

I think I figured my mistake, I was missing the "-surfList" flag after my input file. Now, the when I run the following command:

./StatNonParamTestPDM /data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/meshList.txt -surfList -out /data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/first_StatNonParamTestPDM_result -numPerms 20000 -signLevel 0.05 -signSteps 1000 -v


I see the list of subjects, but again I get an error, this time:
...
...
/data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/all_meshes/TLE_P5_LH_pp_surfSPHARM_procalign.meta 1 1
/data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/all_meshes/TLE_P6_LH_pp_surfSPHARM_procalign.meta 1 1
/data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/all_meshes/TLE_P7_LH_pp_surfSPHARM_procalign.meta 1 1
/data/hippocampus_shape_analysis/ShapeAnalysis_results_LH_minus2/Stats/all_meshes/TLE_P8_LH_pp_surfSPHARM_procalign.meta 1 1
0 0
CellType required and not defined.
MetaObject: Read: MET_Read Failed
MetaScene: Read: Cannot open file
Error reading meshfile:
ITK error: itk::ERROR: SpatialObjectReader(0x17acc30): No groups were found in file

Could someone please tell me what's wrong? Thank you very much,
-Mojdeh