open-discussion
open-discussion > RE: SLOMOCO and ART Toolbox
May 7, 2015 10:05 AM | Erik Beall
RE: SLOMOCO and ART Toolbox
Eduardo,
The best file to use for slicewise scrubbing is slomoco.TDzmetric.txt. This is a slicewise average voxel displacement motion metric (Jiang et al 1995 Human Brain Mapping) generated from the slicewise out-of-plane motion parameters, and are the most relevant for residual motion contamination after SLOMOCO has run. This will allow you to identify individual slices that are contaminated, although you can also take a max over each slice group (every zdim) to get a comparable volumetric metric (also saved as slomoco.volumetric.TDzmetric.txt) so you have one motion corruption value per volume.
Erik
The best file to use for slicewise scrubbing is slomoco.TDzmetric.txt. This is a slicewise average voxel displacement motion metric (Jiang et al 1995 Human Brain Mapping) generated from the slicewise out-of-plane motion parameters, and are the most relevant for residual motion contamination after SLOMOCO has run. This will allow you to identify individual slices that are contaminated, although you can also take a max over each slice group (every zdim) to get a comparable volumetric metric (also saved as slomoco.volumetric.TDzmetric.txt) so you have one motion corruption value per volume.
Erik
Threaded View
| Title | Author | Date |
|---|---|---|
| Eduardo A Garza Villarreal | May 4, 2015 | |
| Erik Beall | May 7, 2015 | |
| Eduardo A Garza Villarreal | May 12, 2015 | |
| Erik Beall | May 14, 2015 | |
| Eduardo A Garza Villarreal | May 18, 2015 | |
| Erik Beall | May 21, 2015 | |
| Eduardo A Garza Villarreal | Dec 8, 2015 | |
| Eduardo A Garza Villarreal | Dec 9, 2015 | |
| Eduardo A Garza Villarreal | May 15, 2015 | |
| Eduardo A Garza Villarreal | May 7, 2015 | |