Hello,

Thank you for making your toolbox available!

I have been having some difficulty successfully running the toolbox, however. We have a set of training images that we have used in the past for other WMH toolboxes. We converted the dicom files and then ran the T1/T2 nifti files from 9 pilot subjects through your toolbox, both as a complete batch and individually. Regardless, of the 9 pilot subject sets, only one will provide the 3 EV quantification values. The .txt files for the other 8 subjects are blank where there should be numbers. 
 
We have played around with the default settings, particularly the cleaning threshold, but still no luck with the other 8 sets.
Any recommendations? Is it possible that there may have been something we did not account for before running the sets through W2MHS (perhaps during the dicom-to-nifti conversion)?
 
Thank you!
 
- Jason