general-discussion
general-discussion > RE: BASC in small brain region
Jul 17, 2016 12:07 PM | Yuki Sakai
RE: BASC in small brain region
Dear Bellec,
Thank you for your kind reply.
Re Manuel Garcia-Garcia's poster: I hope it would be published soon. Was it also conducted in voxel level manner or different settings?
Re choice of region growing size: I also think that the voxel level analysis is reasonable, since the results through region growing seemed to be unstable. I run BASC on docker version of NIAK. How can I conduct voxel level BASC? According to some tutorials of NIAK, the region growing method is conducted before BASC. In addition, in the case of voxel level BASC, the brain template such as AAL will not be needed. How can I skip region growing and brain template?
Re choice of the number of clusters: I understand that it is similar with whole brain analysis.
Re the choice of the window length: I'm sorry for my ambiguous question. I know it doesn't depend on the volume of brain regions. I wonder how does the window length set up from number of time points (T) in docker version of NIAK (in which part of scripts?), and I have to set some parameters up for it or not.
Sincerely,
Yuki
Thank you for your kind reply.
Re Manuel Garcia-Garcia's poster: I hope it would be published soon. Was it also conducted in voxel level manner or different settings?
Re choice of region growing size: I also think that the voxel level analysis is reasonable, since the results through region growing seemed to be unstable. I run BASC on docker version of NIAK. How can I conduct voxel level BASC? According to some tutorials of NIAK, the region growing method is conducted before BASC. In addition, in the case of voxel level BASC, the brain template such as AAL will not be needed. How can I skip region growing and brain template?
Re choice of the number of clusters: I understand that it is similar with whole brain analysis.
Re the choice of the window length: I'm sorry for my ambiguous question. I know it doesn't depend on the volume of brain regions. I wonder how does the window length set up from number of time points (T) in docker version of NIAK (in which part of scripts?), and I have to set some parameters up for it or not.
Sincerely,
Yuki
Threaded View
Title | Author | Date |
---|---|---|
Yuki Sakai | Jun 30, 2016 | |
Pierre Bellec | Jul 6, 2016 | |
Yuki Sakai | Jul 17, 2016 | |
Pierre Bellec | Jul 21, 2016 | |