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help > RE: Error in the Specify 1st level - hemodyn
Aug 26, 2017 01:08 PM | Sungho Tak - Wellcome Trust Centre for Neuroimaging, UCL
RE: Error in the Specify 1st level - hemodyn
Dear Bahareh,
It seems that original files, "spm_fnirs_specify1st_ui.m" and "spm_fnirs_get_ones_ui.m", in a directory of "/spm_fnirs" were not replaced by updated files.
Please check if original files in a directory of "/spm_fnirs" were replaced by new files - "updates_model_spec_codes.zip" that were attached to my previous message.
Also, in the SPM for fNIRS toolbox, "Temporal Preprocessing" step should be performed before "Model Specification" step.
Best wishes,
Sungho
PS: I think that you are using an older version of SPM for fNIRS toolbox. You could use the latest version of the toolbox as follows:
(i) download the "spm_fnirs.zip" and unzip the file.
(ii) download the "code_updates_r3.zip" which includes bug fixes, and unzip the file in the directory of "spm_fnirs".
(iii) download the "updates_model_spec_codes.zip" attached to my previous message, and unzip the file in the directory of "spm_fnirs".
Originally posted by BAHAREH BEHBOODI:
It seems that original files, "spm_fnirs_specify1st_ui.m" and "spm_fnirs_get_ones_ui.m", in a directory of "/spm_fnirs" were not replaced by updated files.
Please check if original files in a directory of "/spm_fnirs" were replaced by new files - "updates_model_spec_codes.zip" that were attached to my previous message.
Also, in the SPM for fNIRS toolbox, "Temporal Preprocessing" step should be performed before "Model Specification" step.
Best wishes,
Sungho
PS: I think that you are using an older version of SPM for fNIRS toolbox. You could use the latest version of the toolbox as follows:
(i) download the "spm_fnirs.zip" and unzip the file.
(ii) download the "code_updates_r3.zip" which includes bug fixes, and unzip the file in the directory of "spm_fnirs".
(iii) download the "updates_model_spec_codes.zip" attached to my previous message, and unzip the file in the directory of "spm_fnirs".
Originally posted by BAHAREH BEHBOODI:
Dear Sungho,
Thanks for your quick response.
I have tried the updates codes that you gave me but still, have the same problem after trying to upload "multiple_conditions.mat" file.
Also, I tried to follow the steps for entering the experimental design instead of using "multiple_conditions.mat" and I got this error:
--------------------------------------------------------
Specify GLM-fNIRS for the 1st level analysis...
---------------------------------------------------------
Hemoglobin signal to be analysed: HbOHbR
Specify experimental design...
Reference to non-existent field 'K'.
Error in spm_fnirs_specify1st_ui (line 115)
Error in spm_fnirs>push_specify_Callback (line 75)
function push_specify_Callback(hObject, eventdata, handles)
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in spm_fnirs (line 25)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)spm_fnirs('push_specify_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback
Your help would be really appreciated.
Bests,
Bahareh
Thanks for your quick response.
I have tried the updates codes that you gave me but still, have the same problem after trying to upload "multiple_conditions.mat" file.
Also, I tried to follow the steps for entering the experimental design instead of using "multiple_conditions.mat" and I got this error:
--------------------------------------------------------
Specify GLM-fNIRS for the 1st level analysis...
---------------------------------------------------------
Hemoglobin signal to be analysed: HbOHbR
Specify experimental design...
Reference to non-existent field 'K'.
Error in spm_fnirs_specify1st_ui (line 115)
Error in spm_fnirs>push_specify_Callback (line 75)
function push_specify_Callback(hObject, eventdata, handles)
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in spm_fnirs (line 25)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)spm_fnirs('push_specify_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback
Your help would be really appreciated.
Bests,
Bahareh
Threaded View
| Title | Author | Date |
|---|---|---|
| Eidan Tzdaka | Jan 5, 2017 | |
| Sungho Tak | Feb 7, 2017 | |
| BAHAREH BEHBOODI | Aug 25, 2017 | |
| Sungho Tak | Aug 26, 2017 | |
| BAHAREH BEHBOODI | Aug 26, 2017 | |
| Sungho Tak | Aug 26, 2017 | |
| Helen Carlson | Sep 12, 2019 | |