open-discussion
open-discussion > Problems with FDT-bedpostx
Sep 18, 2017 04:09 AM | Mir Jeong
Problems with FDT-bedpostx
Hello, I'm attempting to use FDT of FSL.
I have successfully used the 'dtifit' command.
I've encountered some problems when trying to use 'bedpostx'
(FSL-FDT diffusion-BEDPOSTX Estimation of diffusion parameters)
I tried to use the input directory as:
/home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/
(with advanced options: Fibres-2, Weight-1, Burn In-1000)
When I hit go, 'Errors: child process exited abnormally' message pops up.
bedpostx /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/. --nf=2 --fudge=1 --bi=1000
/usr/share/fsl/5.0/bin/bedpostx /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/. --nf=2 --fudge=1 --bi=1000
subjectdir is /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474
/home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/data not found
Here's the list of files I have.
eternal@DESKTOP-UNTM4IS:~/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474$ ls
20080811_204605ACEprotocol415088s009a1001.bval
20080811_204605ACEprotocol415088s009a1001.bvec
20080811_204605ACEprotocol415088s009a1001.nii.gz
20080811_204605ACEprotocol415088s009a1001_eddy.ecclog
20080811_204605ACEprotocol415088s009a1001_eddy.nii.gz
DTI_FA.nii.gz
DTI_L1.nii.gz
DTI_L2.nii.gz
DTI_L3.nii.gz
DTI_MD.nii.gz
DTI_MO.nii.gz
DTI_S0.nii.gz
DTI_V1.nii.gz
DTI_V2.nii.gz
DTI_V3.nii.gz
b0.nii.gz
b0_brain.nii.gz
b0_brain_mask.nii.gz
bedpostcom_log.tcl
I would appreciate it if someone pinpoints the problem and how to fix it.
I have successfully used the 'dtifit' command.
I've encountered some problems when trying to use 'bedpostx'
(FSL-FDT diffusion-BEDPOSTX Estimation of diffusion parameters)
I tried to use the input directory as:
/home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/
(with advanced options: Fibres-2, Weight-1, Burn In-1000)
When I hit go, 'Errors: child process exited abnormally' message pops up.
bedpostx /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/. --nf=2 --fudge=1 --bi=1000
/usr/share/fsl/5.0/bin/bedpostx /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/. --nf=2 --fudge=1 --bi=1000
subjectdir is /home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474
/home/eternal/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474/data not found
Here's the list of files I have.
eternal@DESKTOP-UNTM4IS:~/c9image/NDARAF706DLN/s797474/ace/data/NDARupload/NDAR_upload_SN/ndar_DTI51_data/s797474$ ls
20080811_204605ACEprotocol415088s009a1001.bval
20080811_204605ACEprotocol415088s009a1001.bvec
20080811_204605ACEprotocol415088s009a1001.nii.gz
20080811_204605ACEprotocol415088s009a1001_eddy.ecclog
20080811_204605ACEprotocol415088s009a1001_eddy.nii.gz
DTI_FA.nii.gz
DTI_L1.nii.gz
DTI_L2.nii.gz
DTI_L3.nii.gz
DTI_MD.nii.gz
DTI_MO.nii.gz
DTI_S0.nii.gz
DTI_V1.nii.gz
DTI_V2.nii.gz
DTI_V3.nii.gz
b0.nii.gz
b0_brain.nii.gz
b0_brain_mask.nii.gz
bedpostcom_log.tcl
I would appreciate it if someone pinpoints the problem and how to fix it.
Threaded View
Title | Author | Date |
---|---|---|
Mir Jeong | Sep 18, 2017 | |
Cheol Han | Sep 19, 2017 | |
Mir Jeong | Sep 21, 2017 | |
Cheol Han | Oct 9, 2017 | |
Sulantha Sanjeewa | Sep 18, 2017 | |