questions > RE: Files not converted depending on src
Sep 28, 2017  11:09 AM | Paul Wright - King's College London
RE: Files not converted depending on src
Hi Dr Craggs

Life is good, thanks. I hope the same for you.

I'm using dcm2niix on the command line. I particularly like the control over the output filename. So I'm doing the following:
dcm2niix -m y -z y -o ${niftidirectory} -f SubID001_%t_s%s_%d ${dicomdirectory}

This gives me files like the ones above, e.g.:
GP_012_20170614125337_s2_2.5mm_Axials

I've been combining a fairly large set of clinical CTs for my study, so I've been using our imaging analysis network's grid engine to handle the many instances of dcm2niix that the data require.

Paul

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TitleAuthorDate
Paul Wright Sep 27, 2017
Chris Rorden Sep 28, 2017
Chris Rorden Sep 27, 2017
Paul Wright Sep 28, 2017
Paul Wright Sep 28, 2017
Jason Craggs Sep 27, 2017
RE: Files not converted depending on src
Paul Wright Sep 28, 2017