Parallel pool using the 'local' profile is shutting down.
cli ####################################################################
cli Initializing MIPAV/JIST Framework
cli ####################################################################
cli Interpretting command line arguments
cli ####################################################################
edu.vanderbilt.masi.plugins.labelfusion.PluginStatisticalFusion
inAtlas = /DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/mulreg_masked_02atlas/atlas01totest_deformed_label.nii.gz;/DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/mulreg_masked_02atlas/atlas02totest_deformed_label.nii.gz
inTarget = /DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/masked_scan.nii.gz
inAtlas2 = /DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/mulreg_masked_02atlas/atlas01totest_deformed_Scan.nii.gz;/DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/mulreg_masked_02atlas/atlas02totest_deformed_Scan.nii.gz
inHierarchy = = None
inProbability = = None
inOutput = = None
inOutput2 = = None
inConsensus = 0.900000
inPrior = Voxelwise
inConvergence = 0.000100
inMaximum = 100
inWindow = 5
inWindow2 = 5
inWindow3 = 5
inWindow4 = 0
inBias = 0.200000
inAugment = = false
inWeighting = MSD
inSearch = 2
inSearch2 = 2
inSearch3 = 2
inSearch4 = 0
inPatch = 2
inPatch2 = 2
inPatch3 = 2
inPatch4 = 0
inSearch5 = 1.500000e+00
inSearch6 = 1.500000e+00
inSearch7 = 1.500000e+00
inSearch8 = 0
inDifference = 0.150000
inGlobal = 0.000000
inLocal = 0.000000
inUse = true
inSelection = Jaccard
inSelection2 = 0.050000
inNumber = 150
outLabel = /DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/NLstaple_label_masked_02atlas.nii.gz
outPerformance = =
outPerformance2 = = Performance Level Parameters Volume
outLabel2 = =
outLabel3 = = Label Probabilities Volume
outProc = /DATA/251/lzfan
cli ####################################################################
*** Determining appropriate type for the observation object. ***
-> Using ObservationVolumePartial.
+++ Initializing Generic Observation Base +++
+++ Initializing Label Observations (Partial Type) +++
+++ Initializing Generic Observation Base +++
+++ Initializing Label Observations (Volume Type) +++
-> Attempting to determine valid cropping region (found 2 label images)
[=+]
Module Failed in an Ungraceful Manner. Please contact the developer with the following message.
edu.vanderbilt.masi.plugins.labelfusion.PluginStatisticalFusionRuntime Exception:null
edu.vanderbilt.masi.algorithms.labelfusion.ObservationBase.determine_cropping_information(ObservationBase.java:243)
edu.vanderbilt.masi.algorithms.labelfusion.ObservationVolume.(ObservationVolume.java:28)
edu.vanderbilt.masi.algorithms.labelfusion.ObservationVolumePartial.(ObservationVolumePartial.java:61)
edu.vanderbilt.masi.plugins.labelfusion.AbstractStatisticalFusionPlugin$AbstractExecuteWrapper.get_observation_type(AbstractStatisticalFusionPlugin.java:414)
edu.vanderbilt.masi.plugins.labelfusion.AbstractStatisticalFusionPlugin$AbstractExecuteWrapper.execute(AbstractStatisticalFusionPlugin.java:348)
edu.vanderbilt.masi.plugins.labelfusion.PluginStatisticalFusion.execute(PluginStatisticalFusion.java:66)
edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm.runAlgorithm(ProcessingAlgorithm.java:337)
edu.jhu.ece.iacl.jist.pipeline.ProcessingAlgorithm.runAlgorithm(ProcessingAlgorithm.java:321)
edu.jhu.ece.iacl.jist.cli.run.main(run.java:100)
---------- Performance Summary ----------
1) Algorithm Calculation -- ELAPSED TIME: Actual: 0.04 sec / CPU: 0.03 sec

TOTAL ELAPSED TIME: Actual: 0.04 sec / CPU: 0.03 sec
CURRENT MEMORY: Used 90 MB, Free 1841 MB, Total 1932 MB
Error: IOException on GZIPInputStream for NLstaple_label_masked_02atlas.nii.gz
ans =
1
Error using gunzip>gunzipwrite (line 209)
File "/DATA/251/lzfan/Cere_Project/cerlobule_seg_release_06_01_2016/result_lzfan_AD/1_NC001/NLstaple_label_masked_02atlas.nii.gz" is
not in GZIP format.