Hi,

I'm sorry about answering so late, and on top of that it's a no. Showing sections together with the atlas in 3D is an idea which I want to do but never find the time. And I simply don't know Arivis.
However if you happen to be a QuickNII user, you may want to try if Rembrandt Bakker's "Brain Composer" does what you need: https://scalablebrainatlas.incf.org/composer/?template=ABA_v3 (it supports uploading QuickNII data under "Import file from my computer")

I hope this helps a little, best regards,
Gergely