Has anyone any clue about this error?
I encountered the same error on a macbook m1 Ventura 13.4.1, installing the fsl-6.0.7_macos-M1.
The log is as it follows: "
21:06:27 fslinstaller.py: 933: [stderr]: #
>>>>>>>>>>>>>>>>>>>>>>
ERROR REPORT
<<<<<<<<<<<<<<<<<<<<<<
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]:
Traceback (most recent call last):
21:06:27 fslinstaller.py: 933: [stderr]:
File
"/Users/$Usern/fsl/lib/python3.10/site-packages/conda/exceptions.py",
line 1124, in __call__
21:06:27 fslinstaller.py: 933: [stderr]:
return func(*args, **kwargs)
21:06:27 fslinstaller.py: 933: [stderr]:
File
"/Users/$User/fsl/lib/python3.10/site-packages/conda_env/cli/main.py",
line 78, in do_call
21:06:27 fslinstaller.py: 933: [stderr]:
exit_code = getattr(module, func_name)(args, parser)
21:06:27 fslinstaller.py: 933: [stderr]:
File
"/Users/$User/fsl/lib/python3.10/site-packages/conda/notices/core.py",
line 109, in wrapper
21:06:27 fslinstaller.py: 933: [stderr]:
return func(*args, **kwargs)
21:06:27 fslinstaller.py: 933: [stderr]:
File
"/Users/$User/fsl/lib/python3.10/site-packages/conda_env/cli/main_update.py",
line 132, in execute
21:06:27 fslinstaller.py: 933: [stderr]:
result[installer_type] = installer.install(prefix, specs,
args, env)
21:06:27 fslinstaller.py: 933: [stderr]:
File
"/Users/$User/fsl/lib/python3.10/site-packages/mamba/mamba_env.py",
line 153, in mamba_install
21:06:27 fslinstaller.py: 933: [stderr]:
transaction.fetch_extract_packages()
21:06:27 fslinstaller.py: 933: [stderr]:
RuntimeError: Download error (28) Timeout was reached
[https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/osx-arm64/fsl-basisfield-2203.1-hcb8d3e5_4.tar.bz2]
21:06:27 fslinstaller.py: 933: [stderr]: SSL
connection timeout
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]: `$
/Users/$User/fsl/bin/mamba update -n base -f
/private/var/folders/8x/3s_r17r166jgs59n1tl1zvhh0000gn/T/tmp316qp81t/fsl-6.0.7_macos-M1.yml`
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]: environment
variables:
21:06:27 fslinstaller.py: 933: [stderr]:
CIO_TEST=<not
set>
21:06:27 fslinstaller.py: 933: [stderr]:
CONDA_AUTO_UPDATE_CONDA=false
21:06:27 fslinstaller.py: 933: [stderr]:
CONDA_ROOT=/Users/$User/fsl
21:06:27 fslinstaller.py: 933: [stderr]:
CPATH=/usr/local/include
21:06:27 fslinstaller.py: 933: [stderr]:
CURL_CA_BUNDLE=<not set>
21:06:27 fslinstaller.py: 933: [stderr]:
INFOPATH=/opt/homebrew/share/info:
21:06:27 fslinstaller.py: 933: [stderr]:
LD_PRELOAD=<not set>
21:06:27 fslinstaller.py: 933: [stderr]:
LIBRARY_PATH=/usr/local/lib
21:06:27 fslinstaller.py: 933: [stderr]:
MANPATH=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/share/man:/Lib
21:06:27 fslinstaller.py: 933: [stderr]:
rary/Developer/CommandLineTools/usr/share/man:/Library/Developer/Comma
21:06:27 fslinstaller.py: 933: [stderr]:
ndLineTools/Toolchains/XcodeDefault.xctoolchain/usr/share/man:/opt/hom
21:06:27 fslinstaller.py: 933: [stderr]:
ebrew/share/man::
21:06:27 fslinstaller.py: 933: [stderr]:
PATH=/Library/Frameworks/Python.framework/Versions/2.7/bin:/opt/homebrew/bi
21:06:27 fslinstaller.py: 933: [stderr]:
n:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr
21:06:27 fslinstaller.py: 933: [stderr]:
/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/var/run/com.apple.security.cry
21:06:27 fslinstaller.py: 933: [stderr]:
ptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security
21:06:27 fslinstaller.py: 933: [stderr]:
.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.c
21:06:27 fslinstaller.py: 933: [stderr]:
ryptexd/codex.system/bootstrap/usr/appleinternal/bin
21:06:27 fslinstaller.py: 933: [stderr]:
REQUESTS_CA_BUNDLE=<not set>
21:06:27 fslinstaller.py: 933: [stderr]:
SSL_CERT_FILE=<not set>
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]:
active environment : None
21:06:27 fslinstaller.py: 933: [stderr]:
user config file : /Users/$User/.condarc
21:06:27 fslinstaller.py: 933: [stderr]: populated
config files : /Users/$User/fsl/.condarc
21:06:27 fslinstaller.py: 933: [stderr]:
conda version : 23.1.0
21:06:27 fslinstaller.py: 933: [stderr]:
conda-build version : not installed
21:06:27 fslinstaller.py: 933: [stderr]:
python version : 3.10.12.final.0
21:06:27 fslinstaller.py: 933: [stderr]:
virtual packages : __archspec=1=arm64
21:06:27 fslinstaller.py: 933: [stderr]:
__osx=13.4.1=0
21:06:27 fslinstaller.py: 933: [stderr]:
__unix=0=0
21:06:27 fslinstaller.py: 933: [stderr]:
base environment : /Users/$User/fsl (writable)
21:06:27 fslinstaller.py: 933: [stderr]:
conda av data dir : /Users/$User/fsl/etc/conda
21:06:27 fslinstaller.py: 933: [stderr]: conda av
metadata url : None
21:06:27 fslinstaller.py: 933: [stderr]:
channel URLs : https://fsl.fmrib.ox.ac.uk/fsldownloads/...
21:06:27 fslinstaller.py: 933: [stderr]:
https://fsl.fmrib.ox.ac.uk/fsldownloads/...
21:06:27 fslinstaller.py: 933: [stderr]:
https://conda.anaconda.org/conda-forge/o...
21:06:27 fslinstaller.py: 933: [stderr]:
https://conda.anaconda.org/conda-forge/n...
21:06:27 fslinstaller.py: 933: [stderr]:
package cache : /Users/$User/fsl/pkgs
21:06:27 fslinstaller.py: 933: [stderr]:
envs directories : /Users/$User/fsl/envs
21:06:27 fslinstaller.py: 933: [stderr]:
/Users/$User/.conda/envs
21:06:27 fslinstaller.py: 933: [stderr]:
platform : osx-arm64
21:06:27 fslinstaller.py: 933: [stderr]:
user-agent : conda/23.1.0
requests/2.31.0 CPython/3.10.12 Darwin/22.5.0 OSX/13.4.1
21:06:27 fslinstaller.py: 933: [stderr]:
UID:GID : 501:20
21:06:27 fslinstaller.py: 933: [stderr]:
netrc file : None
21:06:27 fslinstaller.py: 933: [stderr]:
offline mode : False
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:27 fslinstaller.py: 933: [stderr]: An unexpected error
has occurred. Conda has prepared the above report.
21:06:27 fslinstaller.py: 933: [stderr]:
21:06:28 fslinstaller.py: 167:
ERROR occurred during installation!
21:06:28 fslinstaller.py: 167: This command returned
an error: /Users/$User/fsl/bin/mamba env update -n base -f
/private/var/folders/8x/3s_r17r166jgs59n1tl1zvhh0000gn/T/tmp316qp81t/fsl-6.0.7_macos-M1.yml
21:06:28 fslinstaller.py:2297: File
"/Users/$User/Downloads/fslinstaller.py", line 2289, in
handle_error
yield
File "/Users/$User/Downloads/fslinstaller.py", line 2387, in
main
install_fsl(ctx)
File "/Users/$User/Downloads/fslinstaller.py", line 1786, in
install_fsl
ctx.run(Process.monitor_progress, cmd,
File "/Users/$User/Downloads/fslinstaller.py", line 1377, in
run
return process_func(admin=self.need_admin,
File "/Users/$User/Downloads/fslinstaller.py", line 905, in
monitor_progress
raise RuntimeError('This command returned '
21:06:28 fslinstaller.py: 167: Removing failed installation
directory /Users/$User/fsl
21:06:28 fslinstaller.py: 764: Running rm -r /Users/$User/fsl [as
admin: False]
".
I tried using Python3 (different versions) and Python2.7.
Thank you for any suggestion.
Threaded View
Title | Author | Date |
---|---|---|
nsav | Jan 23, 2023 | |
nora mila | Dec 25, 2023 | |
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