Hi Dani

This is likely a bug (there are some differences between the UI and non-UI run of protocols). An alternative is to capture also the terminal output (e.g. via redirection into a file), as the interlace correlation values should be reported on the terminal output in a non-UI run.

Also, you could consider moving to the new/next-gen version called dmriprep (which is part of dtiplayground): https://github.com/NIRALUser/DTIPlaygrou...

That version stores the correlation values of the interlace check in the computations/checks.yml output (the UI and non-UI runs are identical in dmriprep as the UI calls the non-UI run)

Best

Martin

Originally posted by Daniel Berge:

Dear DTIPrep developers, 

  I have noticed that, as compared to previous versions, even when specifying Report type "2", the interlace correlation values are not saved in the txt file anymore when I run DTIPrep from my script.

 Surprisingly, if I run exactly the same protocol from de DTIPrep gui, the generated Report file does contain these correlation values.

Any keys about what I might be doing wrong would be much appreciated.

Thanks in advance.

Dani Bergé

Hospital del Mar Research Institute

Barcelona, Spain