Originally posted by Alex Doruyter:

I have reorientated (and resliced) some brain scans in SPM12 which display correctly in SPM but "lose" their reorientation when loaded in MRIcroGL.

MRIcron has an option in preferences to "reorient images when loading" and the images then load in the correct orientation. Is there any equivalent that would allow me to do the same in MRIcroGL?

Just realised I can save/export the reoriented version from MRIcron and then open the new file in MRIcroGL. It then retains the corrected orientation. Thanks!