general-discussion
general-discussion > RE: Errors trying to segment T1w images.
Apr 18, 2011 08:04 AM | U P
RE: Errors trying to segment T1w images.
Hi, thanks very much for answering. My images are DICOM, so I
convert them into NIFTY(.img, .hdr), with MRIConvert and then I'll
need to use niak_brick_nii2mnc. My laptop has Windows7 64bits but I
have seen that MINC tools are for win32 so I'm using a virtual
machine with XP 32bits. Sorry for asking with so much detail.
For installing MINC tools I followed the Binary Instructions, I downloaded "mni-2006-11-15.tar.gz" (I don't know where to put it). Then I downloaded Cygwin, and I chosed the option for installing X11.
After that I downloaded the binary tools for win 32:minc-2.0.15_SEP04_08.exe. So then I didn't understood the last step($ tar zxvf minc-xxxxxx.tar.gz) because my file isn't in tar.gz, and I wrote the following on Cygwin:
cd C:/cygwin/usr/local and then ./minc-2.0.15_SEP04_08.exe A screen appeared and it was installed successful. Have I done the correct thing?
For installing MINC tools I followed the Binary Instructions, I downloaded "mni-2006-11-15.tar.gz" (I don't know where to put it). Then I downloaded Cygwin, and I chosed the option for installing X11.
After that I downloaded the binary tools for win 32:minc-2.0.15_SEP04_08.exe. So then I didn't understood the last step($ tar zxvf minc-xxxxxx.tar.gz) because my file isn't in tar.gz, and I wrote the following on Cygwin:
cd C:/cygwin/usr/local and then ./minc-2.0.15_SEP04_08.exe A screen appeared and it was installed successful. Have I done the correct thing?
Are this way MINC tools installed?
Then in MATLAB's path I have the niak package, the folder of MINC tools and the folder called mni-2006-11-15.tar.gz unziped. Can i follow the steps explained
in: FmriPreprocessing more or less for T1w MRI, despite not being fMRI?
Thanks very much and sorry for the messy message.
Regards.
Threaded View
Title | Author | Date |
---|---|---|
U P | Apr 15, 2011 | |
U P | Apr 21, 2011 | |
U P | Apr 18, 2011 | |
Pierre Bellec | Apr 15, 2011 | |