open-discussion > RE: How to Install Compiled Binaries to Slicer3
Jun 19, 2011  04:06 PM | Xu Yang
RE: How to Install Compiled Binaries to Slicer3
Hi Lucile,
 
I finally was able to make all the modules show up in slicer using the spharm-pdm_v1.10.9_linux64.zip. However, the whole process still didn't run properly.

( I tested every module separately, and found them working fine except StatNonParamTestPDM, where libitklibxml2.so.3.20 => not found.
I couldn't find this lib file in the itk package and don't know where to get it. )

The slicer gives the following error reports.

 Type: Error
Time: Sun Jun 19 23:44:13 2011
Description: ERROR: In /extra/pieper/slicer3/release/Slicer3/Modules/CommandLineModule/vtkCommandLineModuleLogic.cxx, line 1577
vtkCommandLineModuleLogic (0x59ca310): Shape Analysis Module terminated with an unknown exception.
Type: Error
Time: Sun Jun 19 23:44:13 2011
Description: ERROR: In /extra/pieper/slicer3/release/Slicer3/Modules/CommandLineModule/vtkCommandLineModuleLogic.cxx, line 1499
vtkCommandLineModuleLogic (0x59ca310): Shape Analysis Module standard error:
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
Error: Could not run CreateMRML:
No such file or directory
terminate called after throwing an instance of 'std::length_error'
  what():  basic_string::_S_create


 
Thanks for taking your time to help me.
 
Also thanks Sylvia a lot for sharing the valuable experience with me.
 
Best,
 
Xu. 

Originally posted by Lucile Bompard:
Hi Sylvia and Xu,

Apparently the compilation of the new binaries was made with the libraries within Slicer. It might be the reason why you have some problems.
I am going to uplaud a new zip version this morning.

Regards,
Lucile.

Threaded View

TitleAuthorDate
Sylvia Hon Jun 8, 2011
Sylvia Hon Jun 24, 2011
Sylvia Hon Jun 21, 2011
Sylvia Hon Jun 10, 2011
Xu Yang Jun 17, 2011
Sylvia Hon Jun 17, 2011
Lucile Bompard Jun 17, 2011
RE: How to Install Compiled Binaries to Slicer3
Xu Yang Jun 19, 2011
Lucile Bompard Jun 20, 2011
Xu Yang Jun 20, 2011
Lucile Bompard Jun 22, 2011
Lucile Bompard Jun 13, 2011
Sylvia Hon Jun 16, 2011
Lucile Bompard Jun 16, 2011
Sylvia Hon Jun 17, 2011
Sylvia Hon Jun 15, 2011
Sylvia Hon Jun 14, 2011
Sylvia Hon Jun 9, 2011
Lucile Bompard Jun 10, 2011
Sylvia Hon Jun 9, 2011
Lucile Bompard Jun 9, 2011