I can't seem to get AutoSeg to run properly. I followed the advice in the README and installed Slicer 3.6.3 and the latest ANTS (1.9.y), and verified that they work. When I run AutoSeg -gui, I get the GUI and everything seems fine, except that in the output it shows that it's not finding Slicer modules as it goes: e.g.,

  Error: Could not run N4ITKBiasFieldCorrection:
  No such file or directory

The README says that "3D Slicer then needs to be in your PATH, such that its modules are found automatically and thus called properly by AutoSeg". I don't know what specifically that means, and neither the Slicer docs or the AutoSeg ones (which do not include installation, other than the README?) seem to shed any light on this. Searching on the Slicer mailing list archive, advice I saw was to only add the Slicer main directory to the path, and let the Slicer3 program handle setting up its paths... and indeed, when I added additional Slicer directories to my PATH, Slicer3 stopped launching properly until I reverted.

What if anything should be on the PATH to make this work? Since I'm not a regular Slicer user, I'm not sure if I'm having an AutoSeg problem or a Slicer one, but either way it would have been helpful to have a few more details in the README on how to get AutoSeg set up.