adhd200preproc > RE: tissue segmentation of hihpd_asym template
Jan 26, 2012  01:01 AM | Cameron Craddock
RE: tissue segmentation of hihpd_asym template
Hello Wei,

The templates used for the normalization are from here http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1. I had to do some manipulations to the files to get them into the right orientation, etc.. for the preprocessing scripts. You can download the templates that I used for the preprcessing from: http://www.nitrc.org/frs/downloadlink.php/3974.

Why don't you just average the subject specific tissue segmentations to generate your GM mask file? Files named using the format swssd{subject#}_session_{session#}_anat_gm.nii.gz are GM files in template space.

For more information on the Athena pipline, please refer to: http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:AthenaPipeline

Cheers,
Cameron

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TitleAuthorDate
Wei Liu Jan 25, 2012
RE: tissue segmentation of hihpd_asym template
Cameron Craddock Jan 26, 2012
Wei Liu Jan 26, 2012