adhd200preproc
adhd200preproc > RE: tissue segmentation of hihpd_asym template
Jan 26, 2012 01:01 AM | Cameron Craddock
RE: tissue segmentation of hihpd_asym template
Hello Wei,
The templates used for the normalization are from here http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1. I had to do some manipulations to the files to get them into the right orientation, etc.. for the preprocessing scripts. You can download the templates that I used for the preprcessing from: http://www.nitrc.org/frs/downloadlink.php/3974.
Why don't you just average the subject specific tissue segmentations to generate your GM mask file? Files named using the format swssd{subject#}_session_{session#}_anat_gm.nii.gz are GM files in template space.
For more information on the Athena pipline, please refer to: http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:AthenaPipeline
Cheers,
Cameron
The templates used for the normalization are from here http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1. I had to do some manipulations to the files to get them into the right orientation, etc.. for the preprocessing scripts. You can download the templates that I used for the preprcessing from: http://www.nitrc.org/frs/downloadlink.php/3974.
Why don't you just average the subject specific tissue segmentations to generate your GM mask file? Files named using the format swssd{subject#}_session_{session#}_anat_gm.nii.gz are GM files in template space.
For more information on the Athena pipline, please refer to: http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:AthenaPipeline
Cheers,
Cameron
Threaded View
Title | Author | Date |
---|---|---|
Wei Liu | Jan 25, 2012 | |
Cameron Craddock | Jan 26, 2012 | |
Wei Liu | Jan 26, 2012 | |