Hi,

I am trying to perform shape analysis of the skull. To get started I am trying to run the pipeline for a single case. From SegPostProcessCLP I obtain a spherical topology and usin GenParaMeshCLP
/usr/local/bin/spharm/GenParaMeshCLP "/media/CNMC/CS_Results/Normals/3_mo/020-020/Groomed.mhd" "/media/CNMC/CS_Results/Normals/3_mo/020-020/1.vtk" "/media/CNMC/CS_Results/Normals/3_mo/020-020/2.vtk" --label 1 --iter 500


I obtain the following:

https://www.dropbox.com/s/5cqbmiz4tiyfvb...
https://www.dropbox.com/s/ae0nbgw826nivr...

But then /usr/local/bin/spharm/ParaToSPHARMMeshCLP  "/media/CNMC/CS_Results/Normals/3_mo/020-020/1.vtk" "/media/CNMC/CS_Results/Normals/3_mo/020-020/2.vtk" "/media/CNMC/CS_Results/Normals/3_mo/020-020/Results/020_020surf" --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut

produces:

https://www.dropbox.com/s/54l2da335mbq6p...

Any idea what might be going wrong?

Thank you very much in advance!

Carlos S. Mendoza, Ph.D.
Postdoctoral Fellow
Sheikh Zayed Institute for Pediatric Surgical Innovation
Children's National Medical Center
111 Michigan Avenue, NW
Washington, DC 20010
Phone: 202-476-1272
E-mail: CMendoza@cnmc.org, carlos.sanchez.mendoza@gmail.com