open-discussion > Job BET_1 fails
Aug 28, 2012  08:08 AM | Markus Mertens
Job BET_1 fails
The message in the logfile says:

********************
The job starts now !
********************
bet /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz /data/fsl/projects/fischauge_dti/test/con/00001/native_space/nodif_brain -f 0.25 -m -n -R
Can't open /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz.hdr


But when I make a simply check (ls -l) the file does exist, it is of non-zero size and I have read/write access. What can be the reason for this?

$ ls -l /data/fsl/projects/feye_dti/test/con/00001/tmp
insgesamt 31704
-rw-r--r-- 1 fger users  1179134 Aug 28 10:29 data_b0.nii.gz
-rw-r--r-- 1 fger users      153 Aug 28 10:28 dti_00001_bvals_01
-rw-r--r-- 1 fger users     1563 Aug 28 10:28 dti_00001_bvecs_01
-rw-r--r-- 1 fger users 31272949 Aug 28 10:28 dti_00001_DWI_01.nii.gz
drwxr-xr-x 2 fger users     4096 Aug 28 10:30 OutputDone/


When I look in the logfiles I see the following:

$ cat logs/CalculateJobStatusMain.loginfo

                            < M A T L A B (R) >
                  Copyright 1984-2012 The MathWorks, Inc.
                    R2012a (7.14.0.739) 64-bit (glnxa64)
                              February 9, 2012

 
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
 
Undefined function or variable 'TBSSDismap'.
CalculateJobStatusMain in /opt/spm/PANDA-1.1.0_64/CalculateJobStatusMain.m at 94
unexpected end-of-file while reading compressed data
Error using CalculateJobStatusMain (line 15)
Not enough input arguments.
 


How can this issue be solved?

Threaded View

TitleAuthorDate
Job BET_1 fails
Markus Mertens Aug 28, 2012
Markus Mertens Sep 14, 2012
Zaixu Cui Sep 14, 2012
Markus Mertens Sep 14, 2012
Zaixu Cui Sep 15, 2012
Markus Mertens Sep 17, 2012
Zaixu Cui Sep 18, 2012
Zaixu Cui Aug 29, 2012
Markus Mertens Sep 5, 2012