open-discussion
open-discussion > Job BET_1 fails
Aug 28, 2012 08:08 AM | Markus Mertens
Job BET_1 fails
The message in the logfile says:
********************
The job starts now !
********************
bet /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz /data/fsl/projects/fischauge_dti/test/con/00001/native_space/nodif_brain -f 0.25 -m -n -R
Can't open /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz.hdr
But when I make a simply check (ls -l) the file does exist, it is of non-zero size and I have read/write access. What can be the reason for this?
$ ls -l /data/fsl/projects/feye_dti/test/con/00001/tmp
insgesamt 31704
-rw-r--r-- 1 fger users 1179134 Aug 28 10:29 data_b0.nii.gz
-rw-r--r-- 1 fger users 153 Aug 28 10:28 dti_00001_bvals_01
-rw-r--r-- 1 fger users 1563 Aug 28 10:28 dti_00001_bvecs_01
-rw-r--r-- 1 fger users 31272949 Aug 28 10:28 dti_00001_DWI_01.nii.gz
drwxr-xr-x 2 fger users 4096 Aug 28 10:30 OutputDone/
When I look in the logfiles I see the following:
$ cat logs/CalculateJobStatusMain.loginfo
< M A T L A B (R) >
Copyright 1984-2012 The MathWorks, Inc.
R2012a (7.14.0.739) 64-bit (glnxa64)
February 9, 2012
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
Undefined function or variable 'TBSSDismap'.
CalculateJobStatusMain in /opt/spm/PANDA-1.1.0_64/CalculateJobStatusMain.m at 94
unexpected end-of-file while reading compressed data
Error using CalculateJobStatusMain (line 15)
Not enough input arguments.
How can this issue be solved?
********************
The job starts now !
********************
bet /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz /data/fsl/projects/fischauge_dti/test/con/00001/native_space/nodif_brain -f 0.25 -m -n -R
Can't open /data/fsl/projects/fischauge_dti/test/con/00001/tmp/data_b0.nii.gz.hdr
But when I make a simply check (ls -l) the file does exist, it is of non-zero size and I have read/write access. What can be the reason for this?
$ ls -l /data/fsl/projects/feye_dti/test/con/00001/tmp
insgesamt 31704
-rw-r--r-- 1 fger users 1179134 Aug 28 10:29 data_b0.nii.gz
-rw-r--r-- 1 fger users 153 Aug 28 10:28 dti_00001_bvals_01
-rw-r--r-- 1 fger users 1563 Aug 28 10:28 dti_00001_bvecs_01
-rw-r--r-- 1 fger users 31272949 Aug 28 10:28 dti_00001_DWI_01.nii.gz
drwxr-xr-x 2 fger users 4096 Aug 28 10:30 OutputDone/
When I look in the logfiles I see the following:
$ cat logs/CalculateJobStatusMain.loginfo
< M A T L A B (R) >
Copyright 1984-2012 The MathWorks, Inc.
R2012a (7.14.0.739) 64-bit (glnxa64)
February 9, 2012
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
Undefined function or variable 'TBSSDismap'.
CalculateJobStatusMain in /opt/spm/PANDA-1.1.0_64/CalculateJobStatusMain.m at 94
unexpected end-of-file while reading compressed data
Error using CalculateJobStatusMain (line 15)
Not enough input arguments.
How can this issue be solved?
Threaded View
Title | Author | Date |
---|---|---|
Markus Mertens | Aug 28, 2012 | |
Markus Mertens | Sep 14, 2012 | |
Zaixu Cui | Sep 14, 2012 | |
Markus Mertens | Sep 14, 2012 | |
Zaixu Cui | Sep 15, 2012 | |
Markus Mertens | Sep 17, 2012 | |
Zaixu Cui | Sep 18, 2012 | |
Zaixu Cui | Aug 29, 2012 | |
Markus Mertens | Sep 5, 2012 | |