open-discussion
open-discussion > RE: How to discard first 10 volumes of 4D nii
Apr 25, 2013 09:04 AM | elvis dohmatb
RE: How to discard first 10 volumes of 4D nii
The previous responses (fslroi, etc.) certainly solve your problem.
This is just another endeavor.
If you are a python user and have nibabel module installed (which is certainly the case if you use nipy for example), then something along the following lines should deliver the trick. Viz:
import nibabel as ni
fourD_img = ni.load("/home/edohmato/CODE/datasets/fsl-feeds-data/feeds/data/fmri.nii.gz")
fourD_img.shape
trimmed_img = ni.Nifti1Image(fourD_img.get_data()[:, :, :, 10:], fourD_img.get_affine())
trimmed_img.shape
ni.save(trimmed_img, "/tmp/trimmed_img.nii.gz")
Best Regards,
Elvis
If you are a python user and have nibabel module installed (which is certainly the case if you use nipy for example), then something along the following lines should deliver the trick. Viz:
import nibabel as ni
fourD_img = ni.load("/home/edohmato/CODE/datasets/fsl-feeds-data/feeds/data/fmri.nii.gz")
fourD_img.shape
trimmed_img = ni.Nifti1Image(fourD_img.get_data()[:, :, :, 10:], fourD_img.get_affine())
trimmed_img.shape
ni.save(trimmed_img, "/tmp/trimmed_img.nii.gz")
Best Regards,
Elvis
Threaded View
Title | Author | Date |
---|---|---|
Zhiyuan Wang | Apr 24, 2013 | |
Ged Ridgway | Apr 24, 2013 | |
Zhiyuan Wang | Apr 26, 2013 | |
elvis dohmatb | Apr 25, 2013 | |
Justin Senseney | Apr 24, 2013 | |
Marcus heldmann | Apr 24, 2013 | |
Christopher Adamson | Apr 24, 2013 | |