|
Notes:
-Add global option of giving an initial affine transform (for BOTH
BRAINS and ANTS): --initialAffine
-Update BRAINS Registration options as BRAINSDemonWarp options
changed
-Include the external bms scripts into the program
-Possibility to add a path vector in cmd line to find the external
tools
-Find external programs automatically
-Use ResampleDTIlogEuclidean instead of ResampleDTI
-If using ANTs, compute global deformation field with
ResampleDTIlogEuclidean by concatenating corrected Affine.txt and
Warp.nii.gz
-Write out scripts in the output directory instead of the working
directory
-Name bms scripts from outputVolume base to avoid confusion in
output folder if several cases
-As ANTS sends warnings on stderr output, remove exit to prevent
DTI-Reg from crashing when ANTs gives a warning
-Addition of an option in DTI-reg to be able to use
--use-Histogram-Match with ANTs
-Removed ANTS warning caused by --gaussian-smoothing-sigmas not
being set
-Uses ITKTransformTools to copy transform files instead of
'CopyFile' in case the extension is not the same between the input
and output
-If the chosen transform is a BSpline with BRAINS, if an
outputDeformationFieldVolume is specified, we convert the BSpline
text transform into a deformation field. This is convenient when
DTIReg is run from Slicer (When installed as part as
DTIAtlasBuilder extension)
-Removed "None" transforms with ANTS and BRAINS since those were
not necessary
-Modified deformation field variable name to displacement field
since all the deformation fields that are computed by DTIReg are
displacement field
-Addition of an output BSpline transform variable to output the
BSpline computed by BRAINS
-Various improvements for integration as a Slicer4 extension
Changes:
|
