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Notes:
HIGHLIGHTS
- We have developed two independent adds-on:
MENGA_GENE_EXPRESSION and MENGA_GENOMIC_PLOT
The two functions:
1) extract mRNA data in log2 values (MENGA_GENE_EXPRESSION.m), in
case one wants to analyse transcriptome data without having to
complete the integration imaging-genomic analysis;
2) extract mRNA data in linear scale (MENGA_GENOMIC_PLOT.m) to be
used to implement the genomic plot (Veronese M, Zanotti-Fregonara
P, Rizzo G, Bertoldo A, Innis RB, Turkheimer FE. Measuring specific
receptor binding of a PET radioligand in human brain without
pharmacological blockade: The genomic plot. Neuroimage. 2016 Apr
15;130:1-12. doi: 10.1016/j.neuroimage.2016.01.058. Epub 2016 Feb
2).
Both new functions exploit MENGA database without the need to
select an image folder, the only settings to define are the level
of resolution (i.e. list of regions) and the gene list (i.e. the
txt file with the list of genes – defined accordingly ABA
database).
Therefore, the processed ABA database has remained the same: if you
already have downloaded MENGA 3.0, you just need to download the
updated code (code_MENGA_31.zip) and the updated manual.
If you don't have the full database, you can download it from the
url: ftp://www.nitrc.org/home/groups/menga/htdocs/MENGA_30_Export.zip
Changes:
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