Notes:
- DTIAtlasBuilderResults.csv is now being generated for all the sub
atlases
- DTIAtlasBuilderResults.csv for the concatenated displacement
fields is generated in the project root directory with the same
name. This file has the original images' paths, the first level
intermediate files and the concatenated displacement field file
path from the final atlas to the individual images.
- Parallel build using multithread enabled (Change the number of
thread to use in Software configuration tab)
- Desirable usage : set the number of thread whose multiple is
equal to the number of end-nodes to maximize the parallelism
- New action in file menu added : Open Project Directory, which
loads all the parameters and hierarchy from an existing project
directory
- New action in tool menu added : Generate Project Directory, which
generates all the necessary files for the project and doesn't
execute the script.
- Generation of deformation fields track file for the concatenation
by ITKTransformTools
- Concatenation of deformation fields from hierarchical atlas
structure.
- Hierarchical atlas build has been implemented.
- Treeview implemented for GUI users to generate the hierarchy.
- Deformation field track file is generated for the concatenation
over multiple level atlas build.
- MriWatcher can view the final atlases for QC.
- DTIAtlasBuilderParameters.txt now has version 4, where iteration
over final resampling is added and dataset csv file field is
removed.
- ITKTransformTools is added to the installation binary directory
as a tool for the concatenation of deformation fields
- Project directory scaffolding has been changed to
'atlases','final_atlas','common','scripts'
Changes:
## Change Log:
#### [v1.6.4a](http://github.com/NIRALUser/DTIAtlasBuil...) (07/26/2020)
- json related conversion ambiguity resolved.
- glut is not going to be build. Freeglut needs to be installed as
described in Dockerfile
- OSX build bug fixed.
#### [v1.6.4](http://github.com/NIRALUser/DTIAtlasBuil...) (06/27/2020)
- DTIAtlasBuilderResults.csv is now being generated for all the sub
atlases
- DTIAtlasBuilderResults.csv for the concatenated displacement
fields is generated in the project root directory with the same
name. This file has the original images' paths, the first level
intermediate files and the concatenated displacement field file
path from the final atlas to the individual images.
#### [v1.6.3](http://github.com/NIRALUser/DTIAtlasBuil...) (06/08/2020)
- Parallel build using multithread enabled (Change the number of
thread to use in Software configuration tab)
- Desirable usage : set the number of thread whose multiple is
equal to the number of end-nodes to maximize the parallelism
#### [v1.6.1-beta1](http://github.com/NIRALUser/DTIAtlasBuil...) (06/01/2020)
- New action in file menu added : Open Project Directory, which
loads all the parameters and hierarchy from an existing project
directory
- New action in tool menu added : Generate Project Directory, which
generates all the necessary files for the project and doesn't
execute the script.
- Generation of deformation fields track file for the concatenation
by ITKTransformTools
- Concatenation of deformation fields from hierarchical atlas
structure.
#### [v1.6.0](http://github.com/NIRALUser/DTIAtlasBuil...) (05/28/2020)
- Hierarchical atlas build has been implemented.
- Treeview implemented for GUI users to generate the hierarchy.
- Deformation field track file is generated for the concatenation
over multiple level atlas build.
- MriWatcher can view the final atlases for QC.
- DTIAtlasBuilderParameters.txt now has version 4, where iteration
over final resampling is added and dataset csv file field is
removed.
- ITKTransformTools is added to the installation binary directory
as a tool for the concatenation of deformation fields
- Project directory scaffolding has been changed to
'atlases','final_atlas','common','scripts'
#### [v1.5.2](http://github.com/NIRALUser/DTIAtlasBuil...) (04/20/2020)
- Final Atlas will be copied into 5_Final_Atlas directory once
completed
#### [v1.5.1](http://github.com/NIRALUser/DTIAtlasBuil...) (04/09/2020)
- Superbuild pattern renewed
- Scripts are now extracted into independent python codes. Hard
coded scripts are no more to be used.
- JSON incorporated
- Final resampling iteration implemented
- Automatic cleanup for intermediate files in final resampling
steps
#### [v1.5](http://github.com/NIRALUser/DTIAtlasBuil...) (11/12/2018)
- Fix superbuild mechanism for SlicerExtension
- New mechanism to find executables based on Slicer architecture
#### [v1.3](http://github.com/NIRALUser/DTIAtlasBuil...) (06/26/2013)
- File/Folder management:
- Keep original subject names instead of using "CaseX"
- Put final files in specific folders (FinalTensors and
FinalDeformationFields)
- Automatically update files/folders names if running
DTIAtlasBuilder over a previous computation done with an older
version
- Add step at the beginning to filter and set to zero negative
values in tensors to avoid issues in registration
- New Interface features:
- Drag & Drop images and text files (CSV, parameters and software
configuration files)
- "Clean output folder" button
- Keyboard shortcuts
- Remove duplicated cases
- Improve enable/disable buttons
- Other minor bug fixes
- Python version 2.5 minimum required
#### [v1.2](http://github.com/NIRALUser/DTIAtlasBuil...) (05/01/2013)
- Fixing the output global displacement fields when using ANTs
- Files/Folders name changes:
'''
2_NonLinear_Registration/CaseX_DeformationField.mhd ->
2_NonLinear_Registration/CaseX_HField.mhd
4_Final_Resampling/First_Resampling/CaseX_GlobalDeformationField.nrrd
->
4_Final_Resampling/First_Resampling/CaseX_GlobalDisplacementField.nrrd
4_Final_Resampling/Second_Resampling/CaseX_GlobalDeformationField.nrrd
->
4_Final_Resampling/Second_Resampling/CaseX_GlobalDisplacementField.nrrd
'''
#### [v1.1](http://github.com/NIRALUser/DTIAtlasBuil...) (02/22/2013)
- Add a SuperBuild system to automatically download and compile all
needed external tools
- Add DTIAtlasBuilder as a [Slicer extension](http://www.slicer.org/slicerWiki/index.p...)
- Replace AtlasWerks by GreedyAtlas
- Files/Folders name changes:
'''
2_NonLinear_Registration_AW -> 2_NonLinear_Registration
2_NonLinear_Registration/AverageImage.mhd ->
2_NonLinear_Registration/MeanImage.mhd
3_AW_Atlas -> 3_Diffeomorphic_Atlas
3_Diffeomorphic_Atlas/CaseX_AWDTI.nrrd ->
3_Diffeomorphic_Atlas/CaseX_DiffeomorphicDTI.nrrd
3_Diffeomorphic_Atlas/AWAtlasDTI.nrrd ->
3_Diffeomorphic_Atlas/DiffeomorphicAtlasDTI.nrrd
'''
#### [v1.0](http://github.com/NIRALUser/DTIAtlasBuil...) (10/11/2012)
- Initial version
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